Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02682 ATGGGCATCTCTCGTGATTCCATGCATAAGAGGCGTGCCACTGGTGGCAAACAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAACCAGCAAATACAAAGCTATCAAGCAACAAAACAGTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCTTTGAGACTTGATACTGGGAATTACTCTTGGGGGAGTGAAGCTGTGACTCGCAAAACTAGAATTCTTGATGTGATGTATAATGCATCTAACAATGAGCTTGTTCGAACTCAGACACTAGTCAAGACTGCTATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTGTTGACCTTGGTCGCAAGAAGAAGGTTGCAGCTTCTGCCAAGAAGGAAGGAGAGGATGCTGAAACTGCAACTGAAGAGGTGAAGAAGAGTAACCATGTCTTGAGAAAATTGGAAAACCGTAAACAGAACCGGGTGCTTGATCCTCACATTGAAGAACAATTTGGAGGTGGTCGCCTTTTGGCTTGTATCTCATCCCGACCTGGTCAATGTGGTCGTGCTGATGGATATATATTAGAAGGCAAAGAGTTGGAATTCTACATGAAGAAGATTCAGAGGAAGAAGGGCAAGGGTGGCGGTGCTGCTTAA 663 0.454 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVMYNASNNELVRTQTLVKTAIVQVDAAPFKQWYLQHYGVDLGRKKKVAASAKKEGEDAETATEEVKKSNHVLRKLENRKQNRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGGGAA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02682 220 Coils Coil 139 159 - -
Rops11g02682 220 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Rops11g02682 220 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Rops11g02682 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Rops11g02682 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Rops11g02682 220 CDD Ribosomal_S8e_like 5 197 - -
Rops11g02682 220 Gene3D - 162 215 - -
Rops11g02682 220 Gene3D - 32 161 - -
Rops11g02682 220 MobiDBLite consensus disorder prediction 1 41 - -
Rops11g02682 220 FunFam 40S ribosomal protein S8 162 215 - -
Rops11g02682 220 FunFam 40S ribosomal protein S8 32 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02682 Rops-Chr11 46247088 46249352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02682 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.636 4.74e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02682 K02995 - gmx:100527325 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02682 11 46247088 46249352 Rops11g02682 11 46247088 46249352 ECH