Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02660 ATGGTTAACTTGTCATGGTCTATATCAGAACAGATGGAATCGGATCTTGGCAAGCTCTTTGTTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTCAAAGAGTATTTTGGGAAATATGGGGAGGTGATTGAGGCTGTTATCATGAGGGACCGCGCAACAGGCCGTGCACGTGGTTTCGGTTTCATTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAGGCAAAGAAAGCTGTTCCTAGGGATGATCAGCACAATTTAAATAGACAACCTGGTAGTGTACATGCATCTCCTGTTCCTGGACGTACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATCACTGACGTTGTAGTTATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAGCCGGAGCCCGTTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAATTATGCTCAGGGTTATAGCATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTAGAACTGGATTTTCCCCTTTTGGCAACACTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGGAATTCTAATTATGGGAGCAATTTAGGATATGGTCGAATATTTAGCCCTTTCTATGGTGGCAACTCAAGCAGGTATAACACTCCTATAGGCTATAATGGGAGCAATGGGAGAAGCGATTCTCTTGTGAACTCAACTTCTAGGAATGTGTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCAGTTGGCCCTGGTGCTTTCTTGGGATCTGGAAGTGGGACTTTTGGTGTTTCAATTGGAAATAGTGGCACAAATTGGGGCCCATCAATCCCAGCCCAGGGTGGAGGGGCTGCTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAACAGCTTTGGATTAGGTGGGGTAGGGTATGGAAGAAACAGTAACACAGGTGTGACTCCATCCTCTACATTTAATGCATCAACTGGTGGTTATGAAGGATCCTATGGGGAGTTATACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGGTCTGCTGCTTCTGAGATAGATGGTTCTGGGTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGAGGGTTATATTGGAAGCTACAATGTTGCTAGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1470 0.4388 MVNLSWSISEQMESDLGKLFVGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHNLNRQPGSVHASPVPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSRTGFSPFGNTGYGMGVNLDSGLSPSFGGNSNYGSNLGYGRIFSPFYGGNSSRYNTPIGYNGSNGRSDSLVNSTSRNVWGNGGLNNANNPVGPGAFLGSGSGTFGVSIGNSGTNWGPSIPAQGGGAASGYATGSNVYEGGDNSFGLGGVGYGRNSNTGVTPSSTFNASTGGYEGSYGELYRSGSGSVYNDSTWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGSYNVASRQPNRGIAA* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02660 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 16 98 - -
Rops11g02660 489 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 485 - -
Rops11g02660 489 SMART rrm1_1 18 89 IPR000504 GO:0003723
Rops11g02660 489 SMART rrm1_1 118 190 IPR000504 GO:0003723
Rops11g02660 489 Gene3D - 116 196 IPR012677 -
Rops11g02660 489 SUPERFAMILY RNA-binding domain, RBD 7 107 IPR035979 GO:0003676
Rops11g02660 489 MobiDBLite consensus disorder prediction 91 112 - -
Rops11g02660 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Rops11g02660 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 177 IPR000504 GO:0003723
Rops11g02660 489 SUPERFAMILY RNA-binding domain, RBD 116 204 IPR035979 GO:0003676
Rops11g02660 489 Gene3D - 17 99 IPR012677 -
Rops11g02660 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 114 201 - -
Rops11g02660 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Rops11g02660 489 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Rops11g02660 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Rops11g02660 489 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02660 Rops-Chr11 45473388 45476630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02660 16 191 Eukaryotic Initiation Factors Gene Family AT2G23350 22.472 3.74e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02660 K14411 - gmx:100805131 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02660 11 45473388 45476630 Rops11g02660 11 45473388 45476630 ECH