Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02649 ATGCAAACATCTCAGAAAAATGAAATTTCTTATGGCTCTGACAGGTTCTACGTTGAGCCTGTGCAAAATATTGAGTCATATTGCTTTGAGAACATTGACAATTACTGTTCCTCTGATAACAGTAGCCAAACAGCCTACCCTTCTGTCCAAACTTTAGAACCATATTGCACCCTTGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTACTCTCAGTTTCTCATCTCACAATAGCCCAGTTTCAAAGCTAGAGTCAAAATCATATGTGTCAAGGCCACAGCATTCTGTTCAAATTGTTGATGACCCACCTGAGGATGCTTCTTACTTGGTACATGACCTTGATGATAAGATAAGAGAGCTGGAAACTGCTATGCTAGGACCTAATGAAGATACTCTTGATATATATGATGCTGCAATTCCAGAAGAATCAGATTCCTTTCTGTTAGAGGCAGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGGTGCTTTATACTTGTGCTAAAGCAATGGCTGTGAATGATATGGAGACAACTGAATGGTTGGTATCAGAATTGCGAAATATGGTGTCCATTTCAGGCAATCCAATGCAAAGGTTGGGAACATACATGTTGGAGGCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAATCCTTAAAATGTAGTGAACCTACTGGTAATGAACTACTTTCATACATGCATGTACTTTATGAGGTATGTCCATACTTCAAGTTTGGATATATGTCAGCAAATGGAGCTATTGCTGAAGCCATGAAGGAGGAAAATGAAGTACACATAATTGATTTTCAGATTAACCAAGGAAGCCAGTGGGTTAGCCTAATCCAAGCTCTTGCTCACCGGCCCGGGGGACCACCAAAGATCAGAATATCAGGTGTTGATGACAAAGTTTCATCTTATGCAAGAGGAGGAGGACTTGATATAGTTGGGAAAAGGTTATCAACACTTGCACAATCATGTCATGTACCCTTTGAGTTCCATGCTGTTAGAGTTGCTGCTTCTGAGGTGCAAATTGAAGACCTTGAACTTAGACCTTATGAAGCTGTGGCAGTGAATTTTGCAATTATGCTGCACCATGTGCCAGATGAGAGTGTTGACAGCCATAATCCTCGTGACCGGGTGTTGAGGTTGGCTAAGAACTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATTCAATACCAACCATGCACCCTTCTTGCAGCGTTTTGTTGAGACAATGAACTACTATTTAGCTGTTTTTGAATCAATTGATGTTGTTCTACCAAGGGAGCACAAAGAGAGGATTAATGTGGAACAACATTGTTTGGCTAGAGAAGTTGTCAACTTGATAGCATGTGAAGGTGCAGAAAGAGTGGAACGCCATGAGCTTTTGAACAAGTGGAGGATGCGTTTCGCAAAAGCTGGATTTACACCTTATCCATTGAGCTCCTTTATTAATTCTTCAATCAAGGATCTTCTTGAGAGCTACCGTGGACATTATACTCTAGAAGAGAGAGATGGGGCATTATTTCTTGGTTGGATGAATCAAGTTCTTATTGCCTCTTGTGCTTGGACATGA 1623 0.4097 MQTSQKNEISYGSDRFYVEPVQNIESYCFENIDNYCSSDNSSQTAYPSVQTLEPYCTLESASTSNSFPYQNSPSTLSFSSHNSPVSKLESKSYVSRPQHSVQIVDDPPEDASYLVHDLDDKIRELETAMLGPNEDTLDIYDAAIPEESDSFLLEAEKWKKMMEMVSRGDLKEVLYTCAKAMAVNDMETTEWLVSELRNMVSISGNPMQRLGTYMLEALVARMASSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYMSANGAIAEAMKEENEVHIIDFQINQGSQWVSLIQALAHRPGGPPKIRISGVDDKVSSYARGGGLDIVGKRLSTLAQSCHVPFEFHAVRVAASEVQIEDLELRPYEAVAVNFAIMLHHVPDESVDSHNPRDRVLRLAKNLSPKVVTLVEQEFNTNHAPFLQRFVETMNYYLAVFESIDVVLPREHKERINVEQHCLAREVVNLIACEGAERVERHELLNKWRMRFAKAGFTPYPLSSFINSSIKDLLESYRGHYTLEERDGALFLGWMNQVLIASCAWT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02649 540 Pfam GRAS domain family 170 540 IPR005202 -
Rops11g02649 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 534 IPR005202 -
Rops11g02649 540 ProSiteProfiles GRAS family profile. 161 540 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02649 Rops-Chr11 45357212 45360485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02649 1 539 GRAS Transcription Factor Family AT1G50600 56.673 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops11g02649 GRAS 2.6e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02649 - - gmx:100785400 922.154