Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02645 ATGGAAGTGGGTGAAAGTGAAACCATGAATCTTGATTGCGAACAAGCACTGAGTAAGTATCAGGATGTTATAGCCTCAGGGACCAAGTCCATGAAAATGAAAGCCATGATCAAACTAGCCCGTTTCTCTAAACATGCCCCTGAGCATGTATTAGCTCGCACTATACCAATTCTCACTGAGATACTTGGTCAAAATGTTTCCAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGTATTGCTTGCAAAGGTGATGGTGGATTGGCAATTGAAATGGGTGCACATGGTGCAACTCATTCTTTGATAAGGTGGTTGCCTCATTCTGAGGGAAAAATGCAAGAAGTCATGATAAAATGTTTGCTGGTTATTGTCAGTTTTTGTAGTACAAGTAGGACAGTTCTTGCTACCAATGGTGGGTTAGAAATCATCATCAATTTGTTGAATTCTTACACCAATGGTGTTAGGCGGTATCTGTTAGAGATTTTGAGTGTATTGGCATTGCGGAGGGACGTTAGGAAGGCACTCACCAGATTAGGAGCTCTTCATTTTCTTGTGGAGTCTGCTAGTATTGGCAGCATGATCTCTAGGGAAAGAGCTTGTCAATCAATTGGGTTGCTTGCAGTCACAAGACAGGCTAGGCTTATGCTTGTTGAATTGGGAGTGATACCGGTGCTTGTGGAGTTGTTTCGTGATGGAGATCACGCCACAAAACTTATAGCTGGTAATTCTCTTGGTGTGGTATCTGCTCATGTAGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTCCTTCAAGGACCTGATGCTTCTGGTAAGGAGATAGCCGAGGATGTGTTTTGTATATTGGCTGTTGCAGAGGCTAATGCTGTTGAAATTGCTGGACACTTGGTGAGAATTCTTAGAGAAGGTGATGATGAAGCAAAAGCAGCTGCTGCTGATGTGATGTGGGATCTGTCAGGTTACAAGCACTCAACATCTGTGGTCCGGGATTCAGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGCAGTGGAGCTGAAGAGGTAAAGGAGAATGTTTCAGGGGCCTTTGCTCAGCTAAGCTATGATGGAGCAGATAGAATGGCACTTGCTGATGCAGGGGCAATTCCAATTCTCATTGACTTGCTACATGATGAGACTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTTCCAATTTTTATGAAGATCCATTATACCATGATAGAGTATCCGATGCAATTAATGTTCCTTCGTTCAGAAGTATGCAGAATAGACTAATTCATATTCGTGCATCAAATGAGCATATGACTAGATCTTTACGAAGAATGAGTGTTGAGCAGTTCATTCGGAACCCGGATCTTGTATAA 1401 0.4318 MEVGESETMNLDCEQALSKYQDVIASGTKSMKMKAMIKLARFSKHAPEHVLARTIPILTEILGQNVSNDSAPSLQEAAAYCLKCIACKGDGGLAIEMGAHGATHSLIRWLPHSEGKMQEVMIKCLLVIVSFCSTSRTVLATNGGLEIIINLLNSYTNGVRRYLLEILSVLALRRDVRKALTRLGALHFLVESASIGSMISRERACQSIGLLAVTRQARLMLVELGVIPVLVELFRDGDHATKLIAGNSLGVVSAHVDYIRPVAQAGAIPLYAELLQGPDASGKEIAEDVFCILAVAEANAVEIAGHLVRILREGDDEAKAAAADVMWDLSGYKHSTSVVRDSGAIPILVELLGSGAEEVKENVSGAFAQLSYDGADRMALADAGAIPILIDLLHDETEELRDNAAEALSNFYEDPLYHDRVSDAINVPSFRSMQNRLIHIRASNEHMTRSLRRMSVEQFIRNPDLV* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02645 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Rops11g02645 466 Gene3D - 12 254 IPR011989 -
Rops11g02645 466 Gene3D - 255 427 IPR011989 -
Rops11g02645 466 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 307 423 - -
Rops11g02645 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 411 IPR000225 GO:0005515
Rops11g02645 466 Pfam Armadillo/beta-catenin-like repeat 377 410 IPR000225 GO:0005515
Rops11g02645 466 Pfam Armadillo/beta-catenin-like repeat 336 371 IPR000225 GO:0005515
Rops11g02645 466 SUPERFAMILY ARM repeat 27 415 IPR016024 -
Rops11g02645 466 Coils Coil 390 410 - -
Rops11g02645 466 ProSiteProfiles HEAT repeat profile. 385 411 IPR021133 -
Rops11g02645 466 SMART arm_5 132 172 IPR000225 GO:0005515
Rops11g02645 466 SMART arm_5 42 87 IPR000225 GO:0005515
Rops11g02645 466 SMART arm_5 214 254 IPR000225 GO:0005515
Rops11g02645 466 SMART arm_5 255 295 IPR000225 GO:0005515
Rops11g02645 466 SMART arm_5 332 372 IPR000225 GO:0005515
Rops11g02645 466 SMART arm_5 373 413 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02645 262 430 U-box Gene Family AT3G46510 30.460 2.61e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02645 - - gmx:100819735 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02645 11 45244527 45246571 Rops11g02645 11 45244527 45246571 ECH