Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02643 ATGGATTCCATAATACTGGTTTCTTGTACTGCCAACACAGTCTGGTGTTTTGTTAACAAGATGGCTAAACTTACCCCTTTGGAAGAGTCCCTTTTGAACCATGACTCTAGTAGGGTAAGCAACAACTCTAATCCCAAAAATTTAACCAGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCATTAATAACTTTAGGCAGTAAGAAAACTTTAGACCATAAGGACCTTCCACTGCTTGCTATAAACGACAGTGCCTATGGGGCTTTTCCGATTTTTAGAAACAAGCTTGAGTCAGAGTGTGGGAGTGTTAGGAGTGTGACCACTCTTAAGCTGGTCAAGGTGTTATTCTTCTCAACATGGCAAGGGATCCTTTTATCCGGCTCATTTGCATTCTTGTACACATGTGCTTCTTATGTTGGACCCTACCTTATTGACTACCTTGTTCAATACCTCAATGGGGAACACAAGGTTAAACATGAAGGCTATATTTTGGCTATGGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGTGTTAGGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGTTATGGTAGTGGGGAAATCATCAATTTATTGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGACGTGTGTTCTACAAGTTGCTTTGGCCTTGTTAATTCTCTACAGAAGTGTAGGGGTCGCTTCAGTAGCTGCTTTTGCTGCCACTGTAATCGTGATGTTGCTAAACCTTCCTGTGGCATCATTACAAGAAAAGTTCCAAGGAAAAGTAATGGAGTTCAAAGATAAAAGAATGAAGGCAATGTCCGAGATATTAATGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGACAGAAGAGACATGGCTAAAGAAGTTTCTTGTTGGTACAGCAATTATTAGATTTCTCTTCTTTAATGCCCCAACTTTTGTTGCTGTGGTTACTTTTGGTGCTTGTGCTCTTATAGGCATCCCACTTGAATCAGGGAAGGTTTTATCTGCACTTGCAACATTCAGAATTCTCCAAATGCCCATCTATAGTCTTCCTGACACAATCTCAATGATTGTGCAAACTAAGGTTTCCCTTAATAGGATTGCATCATTTCTTAATCTAGATGACTTGCAGACTGATGTAGTGGAGAAGCTTCCAAGGGGTAGTTCTGATGTAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCTGTTAATCCAACATTGAAAAACATAAATCTGAGAGTTTTTCATGGCATGAAGGTAGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCATGTATATTGGGTGAAGTACCAAAGCTATCTGGGACCCTGAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAAAGTGGCAAAATAGAAGATAACATTTTGTTTGGCAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAAACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTTTACCAAGATGCTGATATATATCTGCTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTACTTGGCCTTCTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATTTTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAGGTCAGGCACTGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCTTTGTCTTCAGTTAAGTTCTTAGAGAGAAGGCCCACATTTAAAACATCAAGTATCACCATGGAGGAAAAAGATTCATTAAGTGATTTTGAACTTGAGCAAAACGTTGTAGACATAGACGATCAAAAGGGAAAGTCAGATGATACAGTTGAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAAAAAGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAACAGCTTATGGAGCAGCTCTTGTACCTTTTATATTACTTTCACAGACACTCACAGTGGTTCTCGAGATTGCAAGCAATTATTGGATGGCTTTGGCGACTCCTGTTTCAGCAACTGCTGAACCTGCTATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCTATTGGAAGTTCCTTTTTCACCCTTGCCAGAGCAGTTCTTGCGGTGATAGCTGGATACAAGACAGCCACTATGCTCTTCAATAAAATGCATTTGTGCTTTTTTAGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGAGAATCCTTAATAGAGCTTCAACTGACCAAAATGCATTAGATATGACCATTCCAAATCTATTATGGGGAATTACCTTCTATCTGATTAAGCTCTTGGGAAATATTGCTGTGATGTCTCAAGCTACATGGCAGGTGTTGATAGTATTGATTCCTGTCATGGTAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCAAGGGAATTGGCACGGTTAGTTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTGATGACATAAATATGAAATTGATAGACAAATATTCCCAACCCAAATTATACAGTGCTACTGCAATGGAATGGCTGAATTTCAGATTGGATATTTTATCCTCTACCATATTTGCCTTCTGTTTGGTTTTCTTGATATCCTTTCCAAGTTCAATTACTGATCCTGGCATTGCTGGATTGGCTGTGACATATGGACTTAATCTTAATTCTTTACAATCTGGTTTAATCTGGATGCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGACACCCAACCAGATCATTCTTGGCCATCGTTTGGAGAAGTTCATATCCAAGATTTACAGGTTCGGTATGCTCCTCACTTGCCTCTTGTTTTACGTGGTCTTACTTGCACTTTTACTGCTGGAGCAAGAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCAGACTTGTTGAACCTGTTGCTGGACAAATATTGATAGATAACATTAACATCACTTTGATTGGAATTCATGATTTGAGGTCCAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAACAACCTGGACCCGCTGGAACAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGGGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGATTTGCCTTGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCAACAGATAATATTATTCAGCAAACAGTTAAGCAACAGTTTTCAGAATGCACAGTGATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGTGACATGGTTCTGTTTGTAAATCAAGGGCTTGTTGAGGAATATGATTCACCAAAGAAACTGCTAAAGAACAAATCTTCATCTCTTGCTCAATTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGGTTTGGAAGTTGA 3963 0.3941 MDSIILVSCTANTVWCFVNKMAKLTPLEESLLNHDSSRVSNNSNPKNLTSYSNAGFFSILTFSWMSPLITLGSKKTLDHKDLPLLAINDSAYGAFPIFRNKLESECGSVRSVTTLKLVKVLFFSTWQGILLSGSFAFLYTCASYVGPYLIDYLVQYLNGEHKVKHEGYILAMAFVAAKLVECLSQRHWMFRFQQVGVRMQSMLVAMIYAKGLTLSCQSKEGYGSGEIINLLTVDAERIGEFCWYMHDPWTCVLQVALALLILYRSVGVASVAAFAATVIVMLLNLPVASLQEKFQGKVMEFKDKRMKAMSEILMNMRILKLQAWEMKFLSKIIQLRKTEETWLKKFLVGTAIIRFLFFNAPTFVAVVTFGACALIGIPLESGKVLSALATFRILQMPIYSLPDTISMIVQTKVSLNRIASFLNLDDLQTDVVEKLPRGSSDVAIELVDGNFSWDLSSVNPTLKNINLRVFHGMKVAVCGTVGSGKSTLLSCILGEVPKLSGTLKVCGTKAYVAQSPWIQSGKIEDNILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILRSGTDFMELVGAHRAALSSVKFLERRPTFKTSSITMEEKDSLSDFELEQNVVDIDDQKGKSDDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGAALVPFILLSQTLTVVLEIASNYWMALATPVSATAEPAIGSFTLMVVYVALAIGSSFFTLARAVLAVIAGYKTATMLFNKMHLCFFRAPMSFFDATPSGRILNRASTDQNALDMTIPNLLWGITFYLIKLLGNIAVMSQATWQVLIVLIPVMVACIWYQRYYSASARELARLVGICQAPVIQHFSETISGSTTIRSFEQESRFDDINMKLIDKYSQPKLYSATAMEWLNFRLDILSSTIFAFCLVFLISFPSSITDPGIAGLAVTYGLNLNSLQSGLIWMLCNLENKIISVERILQYTSIPSEAPLVIKDTQPDHSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGARTGIVGRTGSGKSTLVQTLFRLVEPVAGQILIDNINITLIGIHDLRSRLSIIPQDPTMFEGTVRNNLDPLEQYTDEQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLICLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQQFSECTVITIAHRITSILDSDMVLFVNQGLVEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGS* 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02643 1320 FunFam ABC transporter C family member 10 113 426 - -
Rops11g02643 1320 SMART AAA_5 471 644 IPR003593 GO:0016887
Rops11g02643 1320 SMART AAA_5 1100 1285 IPR003593 GO:0016887
Rops11g02643 1320 CDD ABC_6TM_ABCC_D2 755 1049 IPR044726 GO:0140359
Rops11g02643 1320 FunFam ABC transporter C family member 5 718 1055 - -
Rops11g02643 1320 Gene3D - 1057 1310 IPR027417 -
Rops11g02643 1320 Gene3D ABC transporter type 1, transmembrane domain 103 422 IPR036640 GO:0005524|GO:0016020
Rops11g02643 1320 Gene3D ABC transporter type 1, transmembrane domain 719 1055 IPR036640 GO:0005524|GO:0016020
Rops11g02643 1320 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 51 1309 - -
Rops11g02643 1320 SUPERFAMILY ABC transporter transmembrane region 754 1056 IPR036640 GO:0005524|GO:0016020
Rops11g02643 1320 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 130 410 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02643 1320 CDD ABC_6TM_ABCC_D1 131 418 IPR044746 GO:0140359
Rops11g02643 1320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 667 IPR003439 GO:0005524
Rops11g02643 1320 Pfam ABC transporter 1092 1239 IPR003439 GO:0005524
Rops11g02643 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1066 1300 IPR027417 -
Rops11g02643 1320 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 757 1037 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02643 1320 CDD ABCC_MRP_domain2 1072 1292 - -
Rops11g02643 1320 Gene3D - 423 679 IPR027417 -
Rops11g02643 1320 Pfam ABC transporter transmembrane region 130 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02643 1320 Pfam ABC transporter transmembrane region 757 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02643 1320 ProSitePatterns ABC transporters family signature. 569 583 IPR017871 GO:0005524|GO:0016887
Rops11g02643 1320 FunFam ABC transporter C family member 5 429 676 - -
Rops11g02643 1320 CDD ABCC_MRP_domain1 444 644 - -
Rops11g02643 1320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1074 1308 IPR003439 GO:0005524
Rops11g02643 1320 FunFam ABC transporter C family member 3 1057 1309 - -
Rops11g02643 1320 Pfam ABC transporter 462 596 IPR003439 GO:0005524
Rops11g02643 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 666 IPR027417 -
Rops11g02643 1320 SUPERFAMILY ABC transporter transmembrane region 126 425 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02643 Rops-Chr11 45185558 45191536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02643 444 690 Calmodulin-binding Proteins AT2G36910 29.588 2.27e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02643 - K05666 gmx:106794105 2179.44