Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02641 ATGGCTAAACTTACCCCTCTGGAAGAGTCCCTTTTGAACCGTGACTCTAGTAGGGTAAGCAACAATTCTAATCCCAAAAATTTAACCAGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCTCTAATAACTTTAGGCAGTAAGAAAACTTTAGACCATAAGGACCTTCCACTGCTTGCTATAAATGACAGTGCCAATGGGGCTTTTCCAACTTTTAGAAACAAGCTTGAGTCAGAGTGTGGGAGTGTTAGGAGTGTGACAACTCTTAAGCTGGTCAAGGTGTTATTCTTCTCAACATGGCAAGGGATCCTTTTATCAGGCTCATTTGCATTCTTGTACACATGTGCTTCTTATGTTGGACCCTACCTTATTGACAACCTTGTTCAATACCTCAATGGGGAACACAAGGTTAAACATGAAGGCTATATTTTGGCTATGGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTTGATGTTTAGGTTCCAGCAGGTTGGTGTTAGGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGTTATAGTAGTGGGGAAATCATCAATTTAATGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTCGGTACATGCATGATCCATGGATGTGTGTTCTACAAGTTGCTTTGGCCTTGTTAATTCTCTACAGAAGTGTAGGGGTCGCTTCAGTAGCTGCTTTTGCTGCCACTGTAATCGTGATGTTGCTAAACCTTCCTGTGGCATCATTACAAGAAAAGTTCCAAGGAAAAGTAATGGAGTTCAAAGATAAAAGAATGAAGGCAATGTCCGAGATATTAATGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGACAGAAGAGACATGGCTAAAGAAATTTCTTTTTGGTACAGTAATTTTTAGATTTCTCTTCTTTAATGCCCCAACTTTTGTTGCTGTGGTTACTTTTGGTGCTTGTGCTCTTATAGGCATCCCACTAGAATCAGGGAAGGTTTTATCTGCTCTTGCAACATTCAGAATTCTCCAAATGCCTATATATAGTCTTCCTGACACAATTTCAATGATTGTACAAACTAAGGTTTCCCTTAATAGGATTGCATCATTTCTTTGTCTAGATGACTTGCAGACTGATATAGTGGAGAAGCTTCCTCGGGGAAGTTCTGATATAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCTGTTAATCCAACATTGAAAAACATAAATCTGAGAGTTTTTCATGGCATGAAGGTAGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCATGTATATTGGGTGAAGTACCAAAGCTATCTGGGACCCTGAAGGTTTGTGGAAAAAAGGCTTATGTTGCTCAATCACCATGGATACAAAGTGGCAAAATAGAAGATAACATCTTGTTTGGCAAAGAGATGGACAGGGAAAAGTATGAGAAGCTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTGTCATTTGGTGATCAAACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTTTACCAAGATGCTGATATATATCTGCTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTATTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAGGTCGGGCACTGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCTTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGCCTACATTTAAAGCATCAAGTATCACCATGGAGGAAAAGGATTCATTAAGTGATTTTGAACTTGAGCAAAACGTAGAAAACATAGATGATCAAAATGAAAAGTCAGATGACACAGTCGAGCCAAAAGGCCAACTTGTTCAAGATGAAGAAAGGGAAAAAGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAATAGCTTATGGAGGAGCTCTTGTACCTTTTATATTACTTTCACAGACACTCACAGTGGTTCTCCAGATTGCAAGCAATTATTGGATGGCTTTGGCGACTCCTGTTTCAGCAACTGCTGAACCTGCTATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGGTATTGGAAGTTCCTTTTTCACCCTTGCCAGAGCAGGTCTTTCAGTGATAGCTGGATATAAGACAGCCACTATGCTCTTCAATAAAATGCATTTGTGCTTTTTTAGAGCACCAATGTCATTTTTTGATGCCACCCTAAGTGGGAGAATCCTTAATAGAGCTTCAACCGACCAAAATGCATTAGATATTAGCATTCCAAGTCTATTATGGGGATTTACCTTCTATCTGATTCAGCTCTTGGGAAATATTGCTGTGATGTCTCAAGCTACATGGCAGGTTTTGATAGTATTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCAAGGGAACTGGCACGATTAATTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTGATGACATAAATATGAAGTTGATAGACAAATATTCCCAACCCAAATTATACAGCGCTACTGCAATGGAATGGCTCAATTTCAGATTGGATATTTTATCCTCTACCATATTTGCCTTCTGTTTGGTTTTCTTGATATCCTTTCCAAGTTCAATTACTGATCCTGGCATTGCTGGATTGGCTGTGACATATGGACTTAATCTTAATTCCATACAATCTACTTTAATCTGGATTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGACACCCAACCTCATCGTTCTTGGCCATCATTTGGAGAGGTTCATATCCAAGATTTACAGGTTCGGTATGCTCCTCACTTGCCTCTTGTTTTACGTGGTCTTACTTGCACTTTTACTGCTGGAGCAAGAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCAGACTTTTTGAACCTGTTGCTGGAAAAATATTGATAGATAACATTAACATCACTTTGATTGGAATTCATGATTTAAGATCCAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAACAACCTGGACCCGCTGGAACAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAGGAAGGGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGATTTGCCTTGGCCGTGTGCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCAACAGATAATATTATTCAGCAAACAGTTAAGCAACAGTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGTGACATGGTTCTGTTTCTAAATCAAGGGTTTGTTGAGGAATATGATTCACCAAAGAAACTGCTAAAGAACAAATCTTCATCTCTTGCTCAATTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGGTTTGGAAGTTGA 3903 0.3907 MAKLTPLEESLLNRDSSRVSNNSNPKNLTSYSNAGFFSILTFSWMSPLITLGSKKTLDHKDLPLLAINDSANGAFPTFRNKLESECGSVRSVTTLKLVKVLFFSTWQGILLSGSFAFLYTCASYVGPYLIDNLVQYLNGEHKVKHEGYILAMAFVAAKLVECLSQRHLMFRFQQVGVRMQSMLVAMIYAKGLTLSCQSKEGYSSGEIINLMTVDAERIGEFCRYMHDPWMCVLQVALALLILYRSVGVASVAAFAATVIVMLLNLPVASLQEKFQGKVMEFKDKRMKAMSEILMNMRILKLQAWEMKFLSKIIQLRKTEETWLKKFLFGTVIFRFLFFNAPTFVAVVTFGACALIGIPLESGKVLSALATFRILQMPIYSLPDTISMIVQTKVSLNRIASFLCLDDLQTDIVEKLPRGSSDIAIELVDGNFSWDLSSVNPTLKNINLRVFHGMKVAVCGTVGSGKSTLLSCILGEVPKLSGTLKVCGKKAYVAQSPWIQSGKIEDNILFGKEMDREKYEKLLEACSLTKDLEVLSFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILRSGTDFMELVGAHRAALSSVKSLERRPTFKASSITMEEKDSLSDFELEQNVENIDDQNEKSDDTVEPKGQLVQDEEREKGRVGFKVYWKYITIAYGGALVPFILLSQTLTVVLQIASNYWMALATPVSATAEPAIGSFTLMVVYVALGIGSSFFTLARAGLSVIAGYKTATMLFNKMHLCFFRAPMSFFDATLSGRILNRASTDQNALDISIPSLLWGFTFYLIQLLGNIAVMSQATWQVLIVLIPVMAACIWYQRYYSASARELARLIGICQAPVIQHFSETISGSTTIRSFEQESRFDDINMKLIDKYSQPKLYSATAMEWLNFRLDILSSTIFAFCLVFLISFPSSITDPGIAGLAVTYGLNLNSIQSTLIWILCNLENKIISVERILQYTSIPSEAPLVIKDTQPHRSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGARTGIVGRTGSGKSTLVQTLFRLFEPVAGKILIDNINITLIGIHDLRSRLSIIPQDPTMFEGTVRNNLDPLEQYTDEQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLICLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQQFSECTVITIAHRITSILDSDMVLFLNQGFVEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGS* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02641 1300 Pfam ABC transporter 1072 1219 IPR003439 GO:0005524
Rops11g02641 1300 CDD ABCC_MRP_domain2 1052 1272 - -
Rops11g02641 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 390 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02641 1300 SMART AAA_5 1080 1265 IPR003593 GO:0016887
Rops11g02641 1300 SMART AAA_5 451 624 IPR003593 GO:0016887
Rops11g02641 1300 CDD ABCC_MRP_domain1 424 624 - -
Rops11g02641 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1017 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02641 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 647 IPR003439 GO:0005524
Rops11g02641 1300 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 1289 - -
Rops11g02641 1300 FunFam ABC transporter C family member 5 409 656 - -
Rops11g02641 1300 Gene3D - 407 665 IPR027417 -
Rops11g02641 1300 FunFam ABC transporter C family member 5 698 1035 - -
Rops11g02641 1300 Gene3D - 1037 1290 IPR027417 -
Rops11g02641 1300 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Rops11g02641 1300 Pfam ABC transporter 442 576 IPR003439 GO:0005524
Rops11g02641 1300 SUPERFAMILY ABC transporter transmembrane region 735 1036 IPR036640 GO:0005524|GO:0016020
Rops11g02641 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1044 1280 IPR027417 -
Rops11g02641 1300 Gene3D ABC transporter type 1, transmembrane domain 82 406 IPR036640 GO:0005524|GO:0016020
Rops11g02641 1300 Gene3D ABC transporter type 1, transmembrane domain 699 1035 IPR036640 GO:0005524|GO:0016020
Rops11g02641 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1054 1288 IPR003439 GO:0005524
Rops11g02641 1300 MobiDBLite consensus disorder prediction 688 708 - -
Rops11g02641 1300 Pfam ABC transporter transmembrane region 110 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02641 1300 Pfam ABC transporter transmembrane region 737 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02641 1300 CDD ABC_6TM_ABCC_D2 735 1029 IPR044726 GO:0140359
Rops11g02641 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 646 IPR027417 -
Rops11g02641 1300 FunFam ABC transporter C family member 3 1037 1289 - -
Rops11g02641 1300 FunFam ABC transporter C family member 10 93 406 - -
Rops11g02641 1300 CDD ABC_6TM_ABCC_D1 111 398 IPR044746 GO:0140359
Rops11g02641 1300 SUPERFAMILY ABC transporter transmembrane region 106 402 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02641 Rops-Chr11 45157432 45163728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02641 424 670 Calmodulin-binding Proteins AT2G36910 29.213 1.94e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02641 - K05666 gmx:106794105 2140.15