Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02638 ATGCTTATAGGGATCCCCCTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCAGATTCTTCAAGAGCCTATTTATAATCTTCCAGACACAATTTCAATGATGACACAAACAAAGGTTTCTCTTGACAGGATTGCATGTTTCCTTTGTCTTGATGACATGCAGTCTGATATTGTGGAGAAGCTTCCACTCGGTAGTTCTGATACAGCAATTGAAGTGGTTGATGGAAATTTCTCTTGGGATTATTGTTCCCCTAATGCAACATTGAAAAACATAAATCTCAGAGTTTTCCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCCACTTTACTTTCATGTATATTGGGAGAAGTGCCAAAGATATCGGGGGTCCTGAAGGTGTGTGGAACAAAGGCCTATGTGGCTCAGTCACCATGGATACAAAGTAGCAAGATAGAGGAGAATATATTGTTTGGCAAGGATATGGAAAGGGGAAGATATGAGAAGGTCCTTGAAGCATGTTCCCTAAAGAAGGATCTAGATGTTTTGTCATTTGGGGATCAAACAATTATAGGAGAGAGAGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTTAAGGAATGCTTGCTGGGTCTTTTAAGTTCAAAGACAGTGATTTATGTCACTCATCAAGTAGAATTCTTACCTGCTGCTGACCTTATCTTGGTCATGAAGGATGGGAAAATTACTCAATGTGGAAAGTACAATGATCTGCTCAACTCAGGCACTGATTTTATGGAACTAGTTGGTGCTCATAGAGAAGCTTTGTCTGCATTTGTTTCATTAGATGGAGACATAGCATCTGATAAAATAAGTACATCACAGCAGGATGCAAGTGTCTCTCTTTCTCATGGTGTTGAAGAAAATGAAGTAAAGAAAGATGTGCAAAATGGTGGAACAGATGACAAAAGTGAGCCAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAGGGGTAAAGTTGAGTTTTCAGTTTATTGGAAATATATAACAACAGCATATGGAGGAGCTCTTATACCACTCATATTTCTGGCTGAAATTCTGTTTCAACTTCTTCAAATTGGAAGTAACTATTGGATGGCTTGGGCAACTTCAATCTCAACAGATGTGGAGCCACCTGTTGGAGGAAGTACACTTCTAGTTGTCTATGCAGCTTTGGCCTTAGGAAGTTCTTTATGTGTCCTTACCAGAGCAACACTTGTTGTCACAGTTGGTTATAAGACAGCTACTTTACTCTTCAATAAAATGCATTTATGCATTTTCCGTGCTTCAATGTCATTTTTTGATGCAACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATATAAACATTCCATTCCAAACTGCATCATTTGCTTGCTCCATGATCCATCTCCTTGGAATTATAGGGGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCCTTGACAGCAATCAGCATCTGGTATCAGCAATATTATTTACCATCAGCTCGGGAACTATCACGTTTAGTTGGAGTATACAAAGCTCCTGTGATTCAACACTTAGCTGAAACAATTTCAGGCACATTAACAATCAGGAGCTTTGATCAGGTGTCAAGGTTTCAGCAAACAAATATGAAATTGATGGATGGATATTCTCGCCCCAAGTTCAATATTGCTGGTGCTATGGAATGGTTATGCTTCCGTTTAGATATGTTGTCTTCTATCACATTTGCCTTTTGCTTAATATTCTTGATATCAGTTCCACAGGGAGTCATACATTCAGGTGTTGCTGGTTTAGCTGTTACCTATGGCCTTAATCTAAACATTATACAAGCATGGATGATATGGGAACTTAGCACCTTGGAGACCAAAATTATATCAGTGGAAAGAATACTTCAGTATACTTCCCTTCCTAGTGAGCCTCCTCTTGTTGTAGAGGAAAATCAGCCACATACTTCTTGGCCATCTTATGGCACAGTTGATGTTCACAACTTGCAGGTGCGTTATGCTCCACATTTGCCACTTGTGTTGCATGGCCTTACATGCACATTTCATGGAGGAATGAAAACTGGAATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAGCACTTTTCCGAATAGTTGAGCCTACTGCTGGGAGAGTTATGATTGATGGCATCAACATCTCTTCCATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAAGACCCAACCATGTTTGAAGGTACTGTGAGAAGTAATCTGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTGGATAAGTGTCAACTTGGAGATGAAGTAAGAAGGAAAGAAGGAAAGTTAGACTCGGCAATTACTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTTTGTCTTGGTAGGGTGCTGCTTAAGAAGAGTAAGGTCTTGGTACTAGATGAAGCAACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCTCTGATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTAATTGATAGTGATATGGTTCTATTACTTAATCAAGGACTTATTGAGGAGTATGATTCCCCAACAAGATTGCTAGAGGACAAGTTTTCTTCTTTTGCTCAACTTGTTGCAGAGTATACCACAAGGTCCAACTCCAGTTTTGACCCACTAAAATAA 2853 0.3985 MLIGIPLESGKILSALATFQILQEPIYNLPDTISMMTQTKVSLDRIACFLCLDDMQSDIVEKLPLGSSDTAIEVVDGNFSWDYCSPNATLKNINLRVFHGMRVAVCGTVGSGKSTLLSCILGEVPKISGVLKVCGTKAYVAQSPWIQSSKIEENILFGKDMERGRYEKVLEACSLKKDLDVLSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHREALSAFVSLDGDIASDKISTSQQDASVSLSHGVEENEVKKDVQNGGTDDKSEPKGQLIQEEERERGKVEFSVYWKYITTAYGGALIPLIFLAEILFQLLQIGSNYWMAWATSISTDVEPPVGGSTLLVVYAALALGSSLCVLTRATLVVTVGYKTATLLFNKMHLCIFRASMSFFDATPSGRILNRASTDQSAVDINIPFQTASFACSMIHLLGIIGVMSQVAWQVFIVFIPLTAISIWYQQYYLPSARELSRLVGVYKAPVIQHLAETISGTLTIRSFDQVSRFQQTNMKLMDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFCLIFLISVPQGVIHSGVAGLAVTYGLNLNIIQAWMIWELSTLETKIISVERILQYTSLPSEPPLVVEENQPHTSWPSYGTVDVHNLQVRYAPHLPLVLHGLTCTFHGGMKTGIVGRTGSGKSTLIQALFRIVEPTAGRVMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDSAITENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLEDKFSSFAQLVAEYTTRSNSSFDPLK* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02638 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 295 IPR003439 GO:0005524
Rops11g02638 950 Gene3D ABC transporter type 1, transmembrane domain 345 683 IPR036640 GO:0005524|GO:0016020
Rops11g02638 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 704 936 IPR003439 GO:0005524
Rops11g02638 950 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 937 - -
Rops11g02638 950 FunFam ABC transporter C family member 5 346 683 - -
Rops11g02638 950 FunFam ABC transporter C family member 3 685 937 - -
Rops11g02638 950 SUPERFAMILY ABC transporter transmembrane region 382 683 IPR036640 GO:0005524|GO:0016020
Rops11g02638 950 Pfam ABC transporter transmembrane region 385 626 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02638 950 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
Rops11g02638 950 Pfam ABC transporter 90 224 IPR003439 GO:0005524
Rops11g02638 950 CDD ABCC_MRP_domain2 700 920 - -
Rops11g02638 950 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 385 665 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g02638 950 Pfam ABC transporter 719 867 IPR003439 GO:0005524
Rops11g02638 950 FunFam ABC transporter C family member 5 57 304 - -
Rops11g02638 950 CDD ABC_6TM_ABCC_D2 383 677 IPR044726 GO:0140359
Rops11g02638 950 Gene3D - 55 304 IPR027417 -
Rops11g02638 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 294 IPR027417 -
Rops11g02638 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 927 IPR027417 -
Rops11g02638 950 CDD ABCC_MRP_domain1 72 272 - -
Rops11g02638 950 Gene3D - 685 938 IPR027417 -
Rops11g02638 950 SMART AAA_5 728 913 IPR003593 GO:0016887
Rops11g02638 950 SMART AAA_5 99 272 IPR003593 GO:0016887
Rops11g02638 950 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02638 Rops-Chr11 45118581 45122586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02638 700 926 Calmodulin-binding Proteins AT2G36910 29.130 1.59e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02638 - K05666 gmx:100775358 1635.54