Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02612 ATGACTGTAAACAATCGCTGTTTTGTGGAATGGAAAGAGCAGTTTGTTTCACAGGAGCGTGGCAATCGTGTGGTTCATTATTACCTGAAGGATTCAGCTGGGGAATCCATCCTTGCAGTTGTGGGCACTGAGAGGAGCATTAGACACATGTGCTATGTTGTAGCTGAGGAGTTCCTTGAAATTTGTGGGCAGGAGGGTTCCATTCCAACTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAATGCTATCAAAGCAGCATCTGCAGGGAGATAGAAGTGTACTTGCTGGTCATAATTTGGGACTACCTCATGATACCACAAATGGCAGTGCCAATGAAATTACTGGACAGTCTGCACAAATAGCAGATGACAAGGACATTCTAGTGAGTAACTCCAAATTATCCAATTCAGACATTGTCTGGTCTGGTGTTGCATGGACATGTGGCAAACAACTCAAGCATTATCCTATGTTTTGCAGGAATGGTATCAAAATAGTGATTCAATCCTTTGTTTTTGTAATGGGCAAGGGAGAGAATCATTACGTTGCTTACTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTTAAGGTGAGGTGGTTTCATCATAATCAGGAAGTCAAGGGTGTAATTCCTGTACGAAATCCTCACCCCCGGGAAGTTTTTATCACACCTTATTCTCAAGTTATTAGTGCAGAGTGTGTTGATGGTCCTGCCACAGTCTTAACTCGTGAACACTATGAAAAATGCATGCCTTATTTTTCCCTCACTTCAACAGAGAGAATACATTTGTGCTTTAGGCAATTTAAAGGGAACAAGGTCAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACCATGCTCAACCAGTTCTTTCTTGCTTGCACCTTGATTCTATCCAGAACCCTGAGTCTAAGAGCAACAGCGTTGCAGGAGAAGATGAATATTTGAATGTAGGTGATGAGGCAAAGCTGGGAGCCAAGAGGAACAGAGGTGATAGGGGGTCTCCTCAGTCTATAGGTAGACAGGGAGTTAGGAAGTTAATTAGAAGTAAGCAAAGGATGGTATACAAAACCTTCCAGGGTGTAAATTATGCTAGGCCAGATAGTAGATTGCTTTCTCTGAAGCAGGTTGAATGTCAACGGTGGTATAACCCCACATACAAGGTTGATGACAAAATAGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTGCAGGTTGCCCGGAAACAGTTGAAAGTCCAATATGATGATGTTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTCAAGTTGGCCATGCCTGATAAACTTGGGATGAGGCATTCTGGCCGACCAACCATCAGGCCAGCTCCAACTTACGAGGAACAAGAACTGGCTGTTGAGGTTGGAGCTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTGACAAGAATTGACAACTGTGGTGATGATAGTGTTCAAGTCTATTTTTCTGGTGAATGCTTGCTGATGAAAGTGCGCAAGAAAGATTTAAGAATATCTAGGGATTGGTTAGGTGACAGGTGGATTAACATCAAGGCAAAACCTGATATAACCTCAACCATATTCACAACTAATAGCTTTAACTCAAAGCTTTCCATGTCTATGGCTAAGGATGCTGACTCTGTTGGTTTTGCTAATTCATGTCATGACAATCTTGCTAGTAAGAAGTCTAATGAACCTGATGTTGTTGAAGAGAAAGTTGTCTGTTGTGATGGCTTTGCTGAAGATGGGGATTGTGTCCATGATAATGGCAAAACTCCTTCAGAAAAATGTACCCAAGTTGATAATATTGAAATGCGTGGCAGTTGTGATAATGAAGATAATGGTGATGATAATGGTAAGGACAACAATGATGATGCTGATAACAAGAATGGTAACAATGATAATAGGGATATTGAGTTACTTGAAACTTCTGGACCGGACTGTAAAGCTGTAGAACTCATGGAAGTGACTGTATAA 2052 0.4254 MTVNNRCFVEWKEQFVSQERGNRVVHYYLKDSAGESILAVVGTERSIRHMCYVVAEEFLEICGQEGSIPTGFKWRSRREVVDWLTSMLSKQHLQGDRSVLAGHNLGLPHDTTNGSANEITGQSAQIADDKDILVSNSKLSNSDIVWSGVAWTCGKQLKHYPMFCRNGIKIVIQSFVFVMGKGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPREVFITPYSQVISAECVDGPATVLTREHYEKCMPYFSLTSTERIHLCFRQFKGNKVKPFDLSKLRGYHAQPVLSCLHLDSIQNPESKSNSVAGEDEYLNVGDEAKLGAKRNRGDRGSPQSIGRQGVRKLIRSKQRMVYKTFQGVNYARPDSRLLSLKQVECQRWYNPTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAMPDKLGMRHSGRPTIRPAPTYEEQELAVEVGAAVDAWWSDGWWEGVVTRIDNCGDDSVQVYFSGECLLMKVRKKDLRISRDWLGDRWINIKAKPDITSTIFTTNSFNSKLSMSMAKDADSVGFANSCHDNLASKKSNEPDVVEEKVVCCDGFAEDGDCVHDNGKTPSEKCTQVDNIEMRGSCDNEDNGDDNGKDNNDDADNKNGNNDNRDIELLETSGPDCKAVELMEVTV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02612 683 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Rops11g02612 683 Pfam BAH domain 175 271 IPR001025 GO:0003682
Rops11g02612 683 Pfam Agenet domain 397 471 IPR008395 -
Rops11g02612 683 SMART agenet_At_2 392 457 IPR014002 -
Rops11g02612 683 SMART agenet_At_2 478 536 IPR014002 -
Rops11g02612 683 SMART BAH_4 168 287 IPR001025 GO:0003682
Rops11g02612 683 CDD BAH_plant_1 163 292 - -
Rops11g02612 683 CDD Tudor_Agenet_AtDUF_rpt1_3 394 471 - -
Rops11g02612 683 Gene3D - 136 289 IPR043151 -
Rops11g02612 683 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 394 620 - -
Rops11g02612 683 MobiDBLite consensus disorder prediction 631 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02612 Rops-Chr11 44690382 44695475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02612 406 534 PHD Transcription Factor Family AT5G58610 29.323 1.31e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02612 - - gmx:100306240 1070.07