Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02589 ATGGCGGACTCGGACAACGATTCCGGCGGAGCGCATAACGCCGGCGGATCGAACTCTCAGAGCGAGATGTCACCGAGAGAACAGGACCGGTTCCTTCCGATAGCGAACGTGAGCAGAATCATGAAGAAGGCACTTCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAAACGGTGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGTCAGCGTGAGAAGCGCAAGACCATCAACGGCGACGACTTGCTTTGGGCGATGACCACGCTTGGATTCGAGGACTACGTGGAGCCTCTGAAGGGCTATCTTCAACGATTCAGGGAGATGGAAGGAGAGAAGAGCGTGGCGGCGCGTGATAAAGACGCGCCTCTTCCTGCTGCTAATGCTAACAACAGTCCCTACGAGAGTGGTAGTTATGGTGGTGGAGTCATGATGTATCCGGGACACGTGTACGGTTCTGGTGGGTTTCATCAAGTGGCTGTGACTGGAACTGGTGGTGGTGCTGTTATGGGTAAGGGTGGGGCTGGTTATCCTGGGCCTGGATCTAATGCAAGTAGGCCCAGATAG 591 0.5584 MADSDNDSGGAHNAGGSNSQSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKSVAARDKDAPLPAANANNSPYESGSYGGGVMMYPGHVYGSGGFHQVAVTGTGGGAVMGKGGAGYPGPGSNASRPR* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02589 196 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops11g02589 196 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Rops11g02589 196 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Rops11g02589 196 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Rops11g02589 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops11g02589 196 MobiDBLite consensus disorder prediction 177 196 - -
Rops11g02589 196 MobiDBLite consensus disorder prediction 10 26 - -
Rops11g02589 196 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Rops11g02589 196 MobiDBLite consensus disorder prediction 1 30 - -
Rops11g02589 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Rops11g02589 196 Gene3D Histone, subunit A 18 141 IPR009072 GO:0046982
Rops11g02589 196 FunFam Nuclear transcription factor Y subunit B-3 20 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02589 Rops-Chr11 44222289 44224867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02589 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.605 4.59e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops11g02589 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02589 K08065 - gmx:100813580 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02589 11 44222289 44224867 Rops11g02589 11 44222289 44224867 ECH
Rops2g04858 2 87817536 87817946 Rops11g02589 11 44222289 44224867 PCT