Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02576 ATGCAACAACAAAGTTCCTCTGAAAGCATAAGAGCTCTAACACCAATCAACCCAAGCAACGATGGTGATGTTCCTCATTTGGCTGTGCAAGAAAAAAATATCATGCCAATTACAAATGTGACAAAAATCATGAGACAGACTCTTCCATTGAATACAAAAATCTCAGAGGGTGCCAAGGAGATTATTCAACAATGTGTTACAAAGTACATAACCTTCATAACAAGAAAAGTCATGGAACGATGCCAAAGTGAGTTCAGAAAGATTATGAGAGCAGAGGATCTGTTGTGGGCCTTAGAGATTCTTGGCTTTATTGATTATATTAGGCCTCTCAATCTTTATCTCTATCGCTATCGCCTTATTGAGGGTAACCTCTACAAATCTCGTGTGGAGCCCATTCCTTTGACTATAAGTCATCATAGCATCGACAATAATGGGCCTAGGCCTTTGTCTGGGCCTGAATCTAGCCTTGTGTCTACTGTTGAGATTCCTCAACCAACCTTACCCTCCCCACTTGCTTCTTTTGGGTCAGACTTTTCCTTGGATCCAAACCCAAAATGGAAATGTTTGGCCCAATGGAATTGGATGTGTTCTATGGAGATGGATTTGGTGTTGGTTCCTCAAACAGTGTTTTGA 633 0.4092 MQQQSSSESIRALTPINPSNDGDVPHLAVQEKNIMPITNVTKIMRQTLPLNTKISEGAKEIIQQCVTKYITFITRKVMERCQSEFRKIMRAEDLLWALEILGFIDYIRPLNLYLYRYRLIEGNLYKSRVEPIPLTISHHSIDNNGPRPLSGPESSLVSTVEIPQPTLPSPLASFGSDFSLDPNPKWKCLAQWNWMCSMEMDLVLVPQTVF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02576 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 30 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops11g02576 210 SUPERFAMILY Histone-fold 33 122 IPR009072 GO:0046982
Rops11g02576 210 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Rops11g02576 210 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Rops11g02576 210 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Rops11g02576 210 Gene3D Histone, subunit A 28 129 IPR009072 GO:0046982
Rops11g02576 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 98 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02576 Rops-Chr11 43968483 43969115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02576 15 122 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.778 4.68e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops11g02576 CBFD_NFYB_HMF 3.4e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02576 K08065 - psat:127084724 114.775