Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02575 ATGTTACCTTTCCTGAATTCCTATGCTTCTACACATATTCTTAAAATTTTGAATAATGAAAGCCTTTTTCTTTGCATTGGTTCAGGTTCATTCCCCTTGCAACAACCGAGTTCCTCTGAAAACATAGGAGCTCCAACACCAATTAACCCAAGCAATGATGGTGTTGTTCCTCATTTGGCCGTGCATGACAAAAATATCTTGTCAATTACAAATGTGACAAAAATCATGAGACAGACTCTTCCATTGAATACAAAAATATCAGAGGGTGCCAAGGAGATGATTCAACGATGTGTTACAAAGTACATAACCTTTATAACAAGAAAAGCCATGGAACGATGCCAAAGTGATTATAGAAAGATTATGAGAGCAGAGGACCTATTGTGGGCCTTAGAGATTCTAGGCTTTACGGACTATATTGGGCCTCTCAATCTTTATATGTATCGCTATCGCCTTATTGAAGGTAACCTCTACAAATCCCGTGTGGAGCTCATTCCTTTGACTATGAGGCATCATAGCATCGACAATAATGGGTTTAGGCCTTTGTCTGGGCCTGAATCTGGCCCTGTGCCTGCTGTTAAGATTCCTCAACCAACCTTACCCTCACCACCAGTTTCTTTTGGGTTGGACTTTTCCTTGGACCCAAACCCAAATCTAGAAATGTTTGGCCCAACGAAATTGGAGGAGTTCTATGGAGATGGATTAGGTGTTGGTTCCTCAAATAGTGCTTTGTTCAACTTTGATCCTTCTGCTGACTTCAACTATGATCACCTGTTAAGTGAGAAAGATGATAATATGACTAACTAA 804 0.4017 MLPFLNSYASTHILKILNNESLFLCIGSGSFPLQQPSSSENIGAPTPINPSNDGVVPHLAVHDKNILSITNVTKIMRQTLPLNTKISEGAKEMIQRCVTKYITFITRKAMERCQSDYRKIMRAEDLLWALEILGFTDYIGPLNLYMYRYRLIEGNLYKSRVELIPLTMRHHSIDNNGFRPLSGPESGPVPAVKIPQPTLPSPPVSFGLDFSLDPNPNLEMFGPTKLEEFYGDGLGVGSSNSALFNFDPSADFNYDHLLSEKDDNMTN* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02575 267 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 69 130 IPR003958 -
Rops11g02575 267 SUPERFAMILY Histone-fold 65 154 IPR009072 GO:0046982
Rops11g02575 267 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 64 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops11g02575 267 Gene3D Histone, subunit A 60 162 IPR009072 GO:0046982
Rops11g02575 267 PRINTS CCAAT-binding transcription factor subunit A signature 132 150 - -
Rops11g02575 267 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Rops11g02575 267 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02575 Rops-Chr11 43957160 43957963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02575 47 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.000 1.99e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops11g02575 CBFD_NFYB_HMF 1.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02575 K08065 - tpra:123912904 149.828