Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02551 ATGAATTCAAGCAGCATGGTTTCATTTCCTTCAAATTCTGCAACAAGAGAAGACAACATGGCCAGTATCCAAAACAGGCCTCCTAGTGCTTCCCCTCCTTCTTTTTTGACCAGGGTGGCCATGAGAATATCTAGATCAAGATGGTTTACCTTCTTAAGAAGAGTATTCCATTACCAAAATGGACCAAGCTCTGATCTTGGCTCCAACCCTTTCAATTCAAGTACTTGGATGATGTTTGAGTTGATTGCTTTGATGGTACAAATAACCAGCACAACATTCACTTTGGCAATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGATATGGATAGCAGGTTATGATATTGGCTGTGTCCTTAATCTGCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAGGATGATGATGCTCTAAGCCTTTCTGAGATGGAGCAGCAGAGAAACAGTGAAGAAACCAGGGTGTACAGGAGCTCACATTTGGTGACCAAATGCAGGAGTTCACTAGAGCTTTTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGGCATTTGACTCACGTTTTGGATCTTTCCAACAAGCTCCAAAACTCCATGTGCTATGCATCATCCTCCTTGCTTGGAATGCAATTTGCTACTCTTTCCCTTTTCTACTGTTCTTGCTCCTTTGCTGTTGTGTGCCACTAGTTAGCACCCTCCTTGGATACAACATGAACATGGGGTCTTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTTCCAAGTTGGAGATATAAAGTGGCTCATCATAAGAACTTAGAACTTGGCAATGATTCTCAAAGCAGTGAAAGATTGATCAATGAAGATCCAGAATGTTGCATTTGCTTAGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGACCTGTTCGCATTTGTTCCACCAAAAATGTGTGGATCAATGGCTAAGAATCATATCCTGCTGCCCTCTTTGTAAACAAGGATTACCAAAGTAG 1008 0.4177 MNSSSMVSFPSNSATREDNMASIQNRPPSASPPSFLTRVAMRISRSRWFTFLRRVFHYQNGPSSDLGSNPFNSSTWMMFELIALMVQITSTTFTLAISKSEKPIWPMRIWIAGYDIGCVLNLLLLCGRYHQLHVTQDDDALSLSEMEQQRNSEETRVYRSSHLVTKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPKLHVLCIILLAWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNMGSSARGASDDQISQLPSWRYKVAHHKNLELGNDSQSSERLINEDPECCICLAKYKDKEEVRQLTCSHLFHQKCVDQWLRIISCCPLCKQGLPK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02551 335 MobiDBLite consensus disorder prediction 1 33 - -
Rops11g02551 335 SUPERFAMILY RING/U-box 280 333 - -
Rops11g02551 335 SMART ring_2 289 329 IPR001841 -
Rops11g02551 335 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 332 - -
Rops11g02551 335 MobiDBLite consensus disorder prediction 1 32 - -
Rops11g02551 335 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
Rops11g02551 335 Pfam Ring finger domain 288 330 IPR001841 -
Rops11g02551 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 334 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02551 Rops-Chr11 43505588 43509245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02551 1 335 C3H Transcription Factor Family AT4G26580 64.179 2.40e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02551 - - gmx:100818715 580.482