Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02538 ATGGCGATGAAACCCTCAACAGCTCGGAACCTTCAACAACTAAGACGAACCAACACCAATGGCGATGAAACCCTAGACAAGAAATTTACCCACCATTCTTCTTCGCTTGATTTCTTCCTCTTTTGCTCGGAAATGTCTCAGGCTGAAAAATTTGTTTTTCATCCTGATATCAACCAGCTTATCAGTTTCAACAGCAACAATTACAAATACCCTAAGAAGAGGACCTTCCTTGACCAGCTCATCAACTTCGCCAAAAATGCTTTGGACAAAATCCGACTTGAGAGTCTAACAGACAAGAGAAAGCTCAATGCACTGCCAGAGTTGTTTATCCGTGTAATTCCTGATAAGACAAACAACACCCTCACCATTGTTGATAGTGGTATTGGTATGACCAAAGATGTTTTGGTGAAGAAATTGGGTACTGATGAATGGTCTGGTCCCGGTGATGTTAGGTTGTACTGGGCATATCTAGTTGCTAAGAAGGTTATTGTTACTACTAAGCACAATGATGATGAGCAGTATGTCTGGGAGTCGCAAACTGACGTGTCTTTCACTGTTACCAGGGATACTTCTGGGGAGAATCTTGGTAGGGGTACTAAGATAACTCTCTTCCTGAAGGAAGATCAGCTTGAGTACCTTGAGGAGCGCCGTTTGAAGCGGATGATTATGAAGTATTCCAAGCTTCTTCGCTACCCAATTTATCTTTGGGTTGAGAAGGAGATTTCTAATGATGAGGATGAGGTGTCACATGAGTGGTACTTGGTGAACGAGCGGGAGATTAATTTTATGGAGCAATTCGCTTTCAAGCACTTCTTTGTTGAGAGTCCACTGAAGATTAAGGCTGCTCTCTTTGTACGCAAGAAGGAACCTTTTGAAACAAAGAAGTCTAGTAACATCAGTGCCTATGTTCATGGTGATCTTATCATGGCCAACTGTAAGGAGTTGATTCCTGGATATCTGGGTTTTGTCAAGGGATCTGTGGATTTACAGGATCCTTCATTCAACATTTATAGAAAAATGTTTCAATGGAACAATATTCTGAAGGTTATTCGTGAGATTTTAGTTGAGAAGTGCTTTGAGCTCTTCTATGAAATTGCTGAGGTTAAGGAGGATTACAACAAGTTCTATGAGGCCTTCTCCTGGTACTTGAAATTGGGTATTCTTCAAGATCCTACGAACAAAATTAAGATTGCTGAATTGCTCAGGTACCACTCCACCATGAGTGGTGATGAGATGACCAGCCTTAAGGACTATGTGACCATGATGAAGGGAGGTCAGAATGAGATCTTCTACATCACTGGTGAAAGCAAGGAAGGCATTGAGAATTCTCCATTCTTGGAGAAATTCAAGAAGAAGGGGTATGAGGTTCTTTTCATGGTCAGTGTCCTTGATATATATGCTGTTAATGAACTCAAGGAATTTGAGGGCAAGAAGTTTGTCTCTGCTACCAAGGAAGGTTTGAAACTTGAAGACGAGAAGGAAAAGAAGGATGAACTCAAGAAGAAGCTTGATGGACTCTGTGAGGTGATGAAGGATGTCTTGCTATACAAGGTGGATGCTGTTGTGGTATCTGACTGTTTTATTCATTCACCTTGCTGTCTTGAGACTGAATATGGGGTGTTAGACAAGAAGATAATGAAGATCAACCCGGAGAATCCTATGCCTGCAACAAAGGAAGAGAAGGAAGATTCTGTTGTCAATGAAACTGTAATGAAAAATTCAAGGGAGGGATCTGGTTCCATTGGATCCAAAACCACTTCTAGCAGGGTAGTTTCCTCCTCTTCTCAGCAGAAAACCGCTCAGAAACAAAGGAGGTACTGGTCGCCAGAGTTGCATTGTCGATTTGTTAAGGCTTTAGAGGAGCTTGGAGGTTCTCAAGAAATACTGACAAGGAGAGTTCCACCTGCCACAGCTGCAACTGCTAATCAATTTGTTGTCGTCCTTAGAGGCTTGTGGATGTACAATGACTCCTCAAAGGGTAGAAGATCTGGTTCAGGTTCTCCTCAAGGATCCCTTCATTTAACTACAGGATCTGGGGAAGGGGCATACCCAACTAATTTTGAGAACATGAAAGATGATGATATAAAATCTGAGTTATAG 2100 0.4181 MAMKPSTARNLQQLRRTNTNGDETLDKKFTHHSSSLDFFLFCSEMSQAEKFVFHPDINQLISFNSNNYKYPKKRTFLDQLINFAKNALDKIRLESLTDKRKLNALPELFIRVIPDKTNNTLTIVDSGIGMTKDVLVKKLGTDEWSGPGDVRLYWAYLVAKKVIVTTKHNDDEQYVWESQTDVSFTVTRDTSGENLGRGTKITLFLKEDQLEYLEERRLKRMIMKYSKLLRYPIYLWVEKEISNDEDEVSHEWYLVNEREINFMEQFAFKHFFVESPLKIKAALFVRKKEPFETKKSSNISAYVHGDLIMANCKELIPGYLGFVKGSVDLQDPSFNIYRKMFQWNNILKVIREILVEKCFELFYEIAEVKEDYNKFYEAFSWYLKLGILQDPTNKIKIAELLRYHSTMSGDEMTSLKDYVTMMKGGQNEIFYITGESKEGIENSPFLEKFKKKGYEVLFMVSVLDIYAVNELKEFEGKKFVSATKEGLKLEDEKEKKDELKKKLDGLCEVMKDVLLYKVDAVVVSDCFIHSPCCLETEYGVLDKKIMKINPENPMPATKEEKEDSVVNETVMKNSREGSGSIGSKTTSSRVVSSSSQQKTAQKQRRYWSPELHCRFVKALEELGGSQEILTRRVPPATAATANQFVVVLRGLWMYNDSSKGRRSGSGSPQGSLHLTTGSGEGAYPTNFENMKDDDIKSEL* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02538 699 MobiDBLite consensus disorder prediction 571 604 - -
Rops11g02538 699 MobiDBLite consensus disorder prediction 658 683 - -
Rops11g02538 699 Pfam Hsp90 protein 261 549 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Rops11g02538 699 Gene3D - 398 484 - -
Rops11g02538 699 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 80 208 IPR003594 -
Rops11g02538 699 Coils Coil 482 509 - -
Rops11g02538 699 SUPERFAMILY HSP90 C-terminal domain 506 555 IPR037196 -
Rops11g02538 699 Gene3D - 75 246 IPR036890 -
Rops11g02538 699 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 45 547 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Rops11g02538 699 MobiDBLite consensus disorder prediction 1 19 - -
Rops11g02538 699 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 49 239 IPR036890 -
Rops11g02538 699 FunFam Heat shock protein 90 alpha 398 484 - -
Rops11g02538 699 Gene3D - 251 397 - -
Rops11g02538 699 MobiDBLite consensus disorder prediction 658 699 - -
Rops11g02538 699 MobiDBLite consensus disorder prediction 571 605 - -
Rops11g02538 699 PRINTS 90kDa heat shock protein signature 49 69 IPR020575 -
Rops11g02538 699 PRINTS 90kDa heat shock protein signature 197 214 IPR020575 -
Rops11g02538 699 PRINTS 90kDa heat shock protein signature 215 233 IPR020575 -
Rops11g02538 699 MobiDBLite consensus disorder prediction 1 25 - -
Rops11g02538 699 SUPERFAMILY Ribosomal protein S5 domain 2-like 261 485 IPR020568 -
Rops11g02538 699 Gene3D - 601 659 - -
Rops11g02538 699 Gene3D - 485 541 IPR037196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02538 Rops-Chr11 43285393 43292943 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02538 589 633 G2-like Transcription Factor Family AT1G68670 48.889 7.49e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02538 K04079 - sind:105176572 583.178