LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g02530	ATGGAATACATGATGATTTCACTAGCTGTGCCATTAAAAAATCTCTCTGTCTGTAATAACTCTCACCTTCTTCCTTTTCTGTGCACCCTTTTCTCTCTCACTCAATTTCTTGTGTTCACCAGGTCTTTGCCAATGGATGCTAAGTCAGCTGTAGATTTAATGCAATCTTCATCTGAGGTTCATTTTTCTGGATTCCACATGGATGGTTTCGAGCAAAGAGAGGCTAGTACAGAGCAACCAACAACTTCAGAAACAGACATGTATAAACAACCTTTCGTCATAGGTGTTGCTGGGGGTGCCGCATCTGGCAAGAAAACAGTTTGTGATATGATTATTCAGCAGCTTCATGACCAGCGAGTTGTACTTGTCAATCAGGATTCTTTTTACAATAACTTGACTGAGGAGGAACTTACAAAAGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTACTCCGTGTTATGGACAAGTTGAAGCGTGGGGAAGCCGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTAGCAAGAAGGATTAAACGTGATACTTCTGAGAAGGGTCGGGATATTGGAACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAACATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCAAATTTATACGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGATAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATTTGCCATTCACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTGGACTTCTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATCCACAGAGAAGGTGACAATGGTCAGCAGTTGATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGTTCCTATCCTTGGCACAGGTAATTCAGCAGTTCAAGCAATTTCTTTACTTATAAGAAAGGGTGTACCAGAGTCCAATATTATATTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAGAGTTTTCCAAGGATTAAAATAGTGACATCTGAAATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCAGGCATGGGAGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGTGCCAGTGGTGGTTCCTTCACAGTAG	1563	0.3941	MEYMMISLAVPLKNLSVCNNSHLLPFLCTLFSLTQFLVFTRSLPMDAKSAVDLMQSSSEVHFSGFHMDGFEQREASTEQPTTSETDMYKQPFVIGVAGGAASGKKTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTKVQDYNFDHPDAFDTEQLLRVMDKLKRGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIKRDTSEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLVPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDVPVVVPSQ*	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g02530	520	PANTHER	URIDINE KINASE	55	418	-	-
	Rops11g02530	520	NCBIfam	uridine kinase	90	289	IPR000764	-
	Rops11g02530	520	CDD	UMPK	93	289	IPR000764	-
	Rops11g02530	520	Gene3D	-	293	508	IPR029057	-
	Rops11g02530	520	Pfam	Phosphoribulokinase / Uridine kinase family	93	277	IPR006083	GO:0005524\|GO:0016301
	Rops11g02530	520	SUPERFAMILY	PRTase-like	292	509	IPR029057	-
	Rops11g02530	520	Pfam	Uracil phosphoribosyltransferase	307	508	-	-
	Rops11g02530	520	CDD	PRTases_typeI	366	481	IPR000836	-
	Rops11g02530	520	FunFam	Uridine kinase	88	292	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	221	231	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	91	108	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	166	181	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	235	246	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	257	270	-	-
	Rops11g02530	520	PRINTS	Uridine kinase signature	121	132	-	-
	Rops11g02530	520	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	82	282	IPR027417	-
	Rops11g02530	520	FunFam	Uridine kinase	293	508	-	-
	Rops11g02530	520	Gene3D	-	87	292	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g02530	Rops-Chr11	43115773	43124070	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g02530	45	511	PRT Gene Family	AT4G26510	84.648	0.0	819

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g02530	K00876		-	gmx:100527893	887.871