Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02528 ATGGACAAGTTGAAGCGTGGGGAAGCTGTAGATATTCCGAAGTATGATTTTAAGAGTTACAAAAGTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTAGCAAGAAGGATTAAGCGTGATACTTCTGAGAAGGGTTGGGATATTGGAACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATACGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGATAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACAGGTGTGGACTTCTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGGTATTAG 666 0.3919 MDKLKRGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIKRDTSEKGWDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRRY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02528 221 Gene3D - 134 221 IPR029057 -
Rops11g02528 221 SUPERFAMILY PRTase-like 144 220 IPR029057 -
Rops11g02528 221 PANTHER URIDINE KINASE 2 219 - -
Rops11g02528 221 Pfam Uracil phosphoribosyltransferase 148 219 - -
Rops11g02528 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 123 IPR027417 -
Rops11g02528 221 Gene3D - 1 133 IPR027417 -
Rops11g02528 221 Pfam Phosphoribulokinase / Uridine kinase family 3 118 IPR006083 GO:0005524|GO:0016301
Rops11g02528 221 CDD UMPK 1 130 IPR000764 -
Rops11g02528 221 PRINTS Uridine kinase signature 7 22 - -
Rops11g02528 221 PRINTS Uridine kinase signature 98 111 - -
Rops11g02528 221 PRINTS Uridine kinase signature 76 87 - -
Rops11g02528 221 PRINTS Uridine kinase signature 62 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02528 Rops-Chr11 43037743 43040349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02528 1 219 PRT Gene Family AT4G26510 90.411 7.44e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02528 K00876 - gmx:100792258 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02528 11 43037743 43040349 Rops9g00168 9 2154368 2161483 PCT