Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02520 ATGAAGATCACTGTTATGACTGCTGATGAACAAATTCTCACATTGGATGTGGATCCCCATGAATCTGTGGAAAACGTTAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCATCAACAGCAACTTCTGTTTAATGGGAGGGAGATGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTCTCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGATCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCGAATTTGATTGGTCAGCTCTTTCAGAATGACCCGGAGTTGGCACAAGCTATTCTAGGGAATGATCTTAATAGATTGCAGGAAGTTTTACGATTGCGCCATAGCCAAAGAGATGAATTACGGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTCATGCTGATCCTTTTGATGTTGAAGCCCAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGCAGCTGCACTTGAACATAATCCTGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGCTGCGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTTGGTCAATCAGAAATATTGGGTCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAATTTCTCTTTGGGCTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTAAAAGAAAATGTTTTACGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCATGAGAAAGACATACCATCTTCAATTTTTGATGAGGAAAAGTTTTCAAAGGAAGCTTCGAGCGCTGGTGGCCCAGTTACTTCAGGGAGCAGTAATCCATCACAAGGAGGTGTATCTTCTGGAGGAGCTTCTGGTGACAGGTCTAAGGATTCTGATTTTGAAGCCAAAGTTGCTAAGCTTGTTGAGTTGGGATTTGGAAGAGATGCAGTTGTACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGGTTCCTTTTTGGGGGCTGA 1221 0.4267 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPLHQQQLLFNGREMRNSEKLSALGVKDDDLLMMVSGAAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLIGQLFQNDPELAQAILGNDLNRLQEVLRLRHSQRDELRRQKEEELALLHADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLHEKDIPSSIFDEEKFSKEASSAGGPVTSGSSNPSQGGVSSGGASGDRSKDSDFEAKVAKLVELGFGRDAVVQALQLFNGNEEQAAGFLFGG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02520 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 403 - -
Rops11g02520 406 Gene3D Acid Proteases 176 322 IPR021109 -
Rops11g02520 406 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Rops11g02520 406 SUPERFAMILY UBA-like 364 406 IPR009060 GO:0005515
Rops11g02520 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Rops11g02520 406 Gene3D - 369 404 - -
Rops11g02520 406 FunFam DNA damage inducible 1 homolog 2 175 322 - -
Rops11g02520 406 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Rops11g02520 406 Pfam UBA/TS-N domain 369 402 IPR015940 -
Rops11g02520 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Rops11g02520 406 SMART uba_6 368 405 IPR015940 -
Rops11g02520 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Rops11g02520 406 Coils Coil 130 150 - -
Rops11g02520 406 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Rops11g02520 406 CDD UBA_scDdi1_like 369 404 - -
Rops11g02520 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Rops11g02520 406 MobiDBLite consensus disorder prediction 336 361 - -
Rops11g02520 406 PRINTS Ubiquitin signature 32 52 IPR019956 -
Rops11g02520 406 PRINTS Ubiquitin signature 11 31 IPR019956 -
Rops11g02520 406 MobiDBLite consensus disorder prediction 334 365 - -
Rops11g02520 406 Gene3D - 1 83 - -
Rops11g02520 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 363 406 IPR015940 -
Rops11g02520 406 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02520 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.78e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02520 K11885 - gmx:100779464 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02520 11 42954372 42966976 Rops11g02520 11 42954372 42966976 ECH