Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02517 ATGCCGACAACGCTCAACCTCGCAGCTCTTTCCGCCGTCCGTCCATTCCGGCGACCGATTTCCGAGTCCGCGAACCACCGCCGGAGCTCGTTTCGTGCGGTCGCGGCGGAGGTGATCGAGTCGCGGATGCCGGCGGCGAGTTTCTACGAGGTGCTTCGAGTGGAGAAGGATGCGTCACCGACGGAGATCAAGTCGGCTTACCGGAATCTGGCGAAGATATACCACCCCGACACGGCGATGAGGCGGTCCCCGGAGTGTGACGGCGGGTACTTCATCGAGATTCGAAACGCGTACGAGACGCTGTCGGATCCTTCGGCGAGGGCGATGTATGACCTGTCGCTGACGGCGGCGAACGGCGGAAGGCAGCGGTTTGCGGCTCCGTTGAGTCAGAATCGGTATTCCGGGTTTTACACGACCCGAAGATGGGAAACGGACCAATGCTGGTAG 447 0.6174 MPTTLNLAALSAVRPFRRPISESANHRRSSFRAVAAEVIESRMPAASFYEVLRVEKDASPTEIKSAYRNLAKIYHPDTAMRRSPECDGGYFIEIRNAYETLSDPSARAMYDLSLTAANGGRQRFAAPLSQNRYSGFYTTRRWETDQCW* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02517 148 CDD DnaJ 48 103 IPR001623 -
Rops11g02517 148 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Rops11g02517 148 SMART dnaj_3 46 106 IPR001623 -
Rops11g02517 148 SUPERFAMILY Chaperone J-domain 42 133 IPR036869 -
Rops11g02517 148 Gene3D DnaJ domain 35 132 IPR036869 -
Rops11g02517 148 ProSiteProfiles dnaJ domain profile. 47 114 IPR001623 -
Rops11g02517 148 Pfam DnaJ domain 48 111 IPR001623 -
Rops11g02517 148 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 20 148 - -
Rops11g02517 148 PRINTS DnaJ domain signature 86 106 IPR001623 -
Rops11g02517 148 PRINTS DnaJ domain signature 49 67 IPR001623 -
Rops11g02517 148 PRINTS DnaJ domain signature 67 82 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02517 Rops-Chr11 42920298 42920744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02517 41 111 C2H2 Transcription Factor Family AT1G74250 44.595 6.02e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02517 - - gmx:100778445 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02517 11 42920298 42920744 Rops11g02517 11 42920298 42920744 ECH
Rops11g02517 11 42920298 42920744 Rops9g00155 9 1917191 1917682 PCT