Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02506 ATGGACAATCAAGTTGAAGTGAAACCAAATCTTATTGCATCCGGGCTCTTAGATGACATGCCTAATACTTGCAAGATGGATTCTCCAAATGGAAGACCAATTAATAAGTCTGAGGATGAATTTGCTTTTGGCCCCGAAATAAATTTTCACCAGCCAGAATCTACTCTGGTGGATGTTCATGGATCACAGTCGGGAGATTTGCAGAGTGCTGATCATGAAACGTTGAGGGGTGTTGTTTGCAGGAGCATCCGAGTTGTAGTTTTCTCTAACAGACTCAACTTGCTAATGCCTTTTGGGCCTCTTGCAATTCTTGTACAGAAATTGACTGGTGATACTGGATGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCAGAGCGGTTAGGTTATGCTACAGAGCAGCTGGCATTTTACACTGGAGATACTGTTGGGGGTCTTTTAAACGCTACATTTGGCAATGCAACAGAATTGATCATCTCAATAATTGCATTGAAAAGTGGAATGATTCGGGTTGTCCAGCTCTCTTTGCTGGGCTCAATTTTGTCAAATATGTTGCTGGTGCTTGGATGTGCATTCTTATGTGGTGGGATTGTTTTTAATAAGAAGGACCAAGTGTTTAACAAGGCAACTGCTTCTGTGAACTCAGGATTATTGCTGATGGCGGTCATGGGCCTACTTTTTCCTGCTGTTCTACATTACACACACACTGAGGTCCATTTTGGGACGTCAGAGTTGTCACTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTATTTTTTCAGTTAAGAAGTCAAAGAAGTCCCTATGTCTCAGTGAACGAGGAAGAGGGTCAGAGTAGAAATGACTCAAATGATGATGAATCTCCAGATATTTCCAAATTCGAATCAATAATCTGGCTCTCAGTTATGACCGCTTGGATATCAGTCCTGTCAGAATATTTGGTTGGCACTATAGAGGGAGCATCTACTGCATGGAAAATTCCAGTCGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTTATACCATTTTGTGTGGTTATTGGCTGGATAATGGGGCATCCTATGGACCTAAACTTTCAACTTTTTGAGACTACAGCATTATTTCTAACTGTTATAGTTGTTGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTATTCTTTGCTATCTGATAGTAGCAGCTAGTTTTTATGTACATGTAGATTCGTCTCAATCTGGCATCTTGCTTGTTCCAATGCCAGCTGTTATTCTGTACAAGGTTCAGTCTCCACTTATACATGCTAGGATATGGAGTAATATGGATGTGAAAAGCTCTCTACAAATAACTAGAAATGGTACTGGTGATTATGATGATGATGGACATCCCAAAAGGACTGGAACTTTAAAGAGTGCTGTGGCTCATATCATTACTGCTGTTATTGGTTCTGGTGTTCTATCTCTGGCATGGAGTACTTCACAATTAGGATGGATTGGAGGGCCAGTTGCCTTGCTTTGCTGTGCAATTGTCACCTATATTTCTTCATTCCTCCTATCTGATTGTTACAGAAATCCTGATCCTGTCACTGGGAAAAGGAACTACTCTTACATGGATGCAGTTAGAGTCTATCTTGGTAATAAAAGGACATATGTGGCTGGTTCCCTTCAATTTTTGACCTTGTATGGGACTAGTACTGCTTATGTAATTACCACAGCAACCAGTCTGAGGGCTATTATGAGATCAAATTGTTATCACAAGGAAGGGCATCAGGCTCCTTGTAATTATGGGGGTAATTTGTATATGGTGATGTTTGGACTTGTTCAGATTGTAATGTCATTCATACCAGATCTCCACAACATGACATGGGTTTCAATTGTTGCTGCAATTATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATAGCAACAGTCATAGAAAATGGAACAATTATGGGGAGCGTGACAGGAGTACCAGCTACTAATGTTGCTAACAAATTCTGGTCAATCTTCCAAGCACTTGGTGACATTTCCTTTTCCTATCCATACTCAATTCTCCTTCTTGAGATACAGGACACTCTAGAGTCTCCACCGCCAGAGAATCAAACCATGAAAAAGGCCTCAATGATTGCAATCTTCATTACAACATTCTTCTACCTCTGTTGTGGATGCTTTGGATATGCAGCTTTTGGAAATGCTACACCAGGAAACCTCTTGACAGGGTTTGGGTTTTATGAGCCTTTCTGGCTTATTGACCTTGCTAATGTTTGCATTATTATCCATTTGGTGGGAGGATATCAGATTTACAGTCAACCAATATATAGTACTGCTGATAGATGGTGTGCAAAAAAATTCCCCAACAGTGGCTTTGTGAATGATTTCCACAAAGTGAAACTGCCTCTGTTGCCCAGATTTCAGATAAATATTTTCAGGTTCTGTTTTAGAACAGCCTATGTGATTTCAACCACTGGACTTGCAATCTTGTTTCCTTACTTCAACCAAGTCCTAGGAGTGTTAGGAGCCATCAACTTCTGGCCACTGGCTATATATTTCCCAGTAGAGATGTACTTTGTACAGCAGAAAATTGAAGCTTGGAGTAGAAAATGGATTGTTCTCAGGACATTTAGCTTTGTTTGCTTTCTTGTGACACTAATGGGCTTTGCAGGGTCACTTGAAGGAATCATACATGAGAAACTTAGCTGA 2829 0.4062 MDNQVEVKPNLIASGLLDDMPNTCKMDSPNGRPINKSEDEFAFGPEINFHQPESTLVDVHGSQSGDLQSADHETLRGVVCRSIRVVVFSNRLNLLMPFGPLAILVQKLTGDTGWVFALSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIIALKSGMIRVVQLSLLGSILSNMLLVLGCAFLCGGIVFNKKDQVFNKATASVNSGLLLMAVMGLLFPAVLHYTHTEVHFGTSELSLSRFSSCVMLVAYAAYLFFQLRSQRSPYVSVNEEEGQSRNDSNDDESPDISKFESIIWLSVMTAWISVLSEYLVGTIEGASTAWKIPVAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVIGWIMGHPMDLNFQLFETTALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHVDSSQSGILLVPMPAVILYKVQSPLIHARIWSNMDVKSSLQITRNGTGDYDDDGHPKRTGTLKSAVAHIITAVIGSGVLSLAWSTSQLGWIGGPVALLCCAIVTYISSFLLSDCYRNPDPVTGKRNYSYMDAVRVYLGNKRTYVAGSLQFLTLYGTSTAYVITTATSLRAIMRSNCYHKEGHQAPCNYGGNLYMVMFGLVQIVMSFIPDLHNMTWVSIVAAIMSFTYSFIGLGLGIATVIENGTIMGSVTGVPATNVANKFWSIFQALGDISFSYPYSILLLEIQDTLESPPPENQTMKKASMIAIFITTFFYLCCGCFGYAAFGNATPGNLLTGFGFYEPFWLIDLANVCIIIHLVGGYQIYSQPIYSTADRWCAKKFPNSGFVNDFHKVKLPLLPRFQINIFRFCFRTAYVISTTGLAILFPYFNQVLGVLGAINFWPLAIYFPVEMYFVQQKIEAWSRKWIVLRTFSFVCFLVTLMGFAGSLEGIIHEKLS* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02506 942 NCBIfam calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
Rops11g02506 942 FunFam Vacuolar cation/proton exchanger 143 282 - -
Rops11g02506 942 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Rops11g02506 942 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016020|GO:0055085
Rops11g02506 942 FunFam Vacuolar cation/proton exchanger 291 447 - -
Rops11g02506 942 NCBIfam calcium/proton exchanger 83 445 - -
Rops11g02506 942 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 69 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops11g02506 942 Pfam Transmembrane amino acid transporter protein 507 937 IPR013057 -
Rops11g02506 942 Gene3D - 290 447 IPR044880 -
Rops11g02506 942 Gene3D - 141 280 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02506 Rops-Chr11 42696570 42714026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02506 34 456 Antiporters AT1G55730 70.449 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02506 K24917 - gmx:100818535 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02506 11 42696570 42714026 Rops11g02506 11 42696570 42714026 ECH