Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02492 ATGTTTTTGCAAGGCAACAAGAAAGGGGACACGTGGATAAGGTTGGTGTCGACGCTAGTATTATGTGGTCCCCACATGGAGGCCACGCGTTTCGCGGATTTCTGCTGGTCAAGGTTTTTTTTGGTTCTTCCTCTGGGATCTGAAGATATGCAGTCCAAGTCAGAAACTGCAAATCGACTGAGGTCGGATCCGCATTCCTTTCAACCTGGTGGTGTTTATTCTGAACCATGGTGGCGTGGTGTTGGGTATAATCCCATGGCCCAAACAATGCCTGGGGCTAATGCATCCAATTCATCCTCTCTTGAATGCCCTAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCTTTGTCCAATAGTGGGCTGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATCAATCAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCAGACTGCATCATCTGCACCTTCCATGCGTGAAGAGTGCCTTGCTCAGACTCCACAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATATTATGGAGGTATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAGGCAGAGCTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCATTGAGAAGGGCAAGGGGGAGTGGAGGACGATTTGCAAAGAAAACTGAAGTTGAAGCCTCAAACAACAACTCAGGCAAGGAAAAGGATAATGGTTCTGGTCCAGTCCTGTCATCACAATCAATCAGTTCATCTGGTTCCGAGCCTTTACCTGCTGACTCTGCCGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGGATCAAAATTGGGGGACAGATTTGAAACACCCCATTATGAAAATGGGAGTGGATCATATCATAATAGTAATAACAATGGTTTGCAATCATCAAGGTATCATCATCATCAGCACTCAGGTGAGGAAGGGGACTGTTCAGGCCAGCAAAGGGGAAGCATCTCTTCCAATGATGCATCACAGAGGCGCCTTGCTATTCAGTAG 1209 0.4615 MFLQGNKKGDTWIRLVSTLVLCGPHMEATRFADFCWSRFFLVLPLGSEDMQSKSETANRLRSDPHSFQPGGVYSEPWWRGVGYNPMAQTMPGANASNSSSLECPNGDSESNEEGQSLSNSGLNEEDDDATKDSQPAAPNQSGNYGQEQQGMQQTASSAPSMREECLAQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHALRRARGSGGRFAKKTEVEASNNNSGKEKDNGSGPVLSSQSISSSGSEPLPADSAETWNSPNMQQDARGSKLGDRFETPHYENGSGSYHNSNNNGLQSSRYHHHQHSGEEGDCSGQQRGSISSNDASQRRLAIQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02492 402 ProSiteProfiles NF-YA/HAP2 family profile. 223 283 IPR001289 GO:0003700|GO:0006355
Rops11g02492 402 MobiDBLite consensus disorder prediction 285 335 - -
Rops11g02492 402 MobiDBLite consensus disorder prediction 380 402 - -
Rops11g02492 402 ProSitePatterns NF-YA/HAP2 subunit signature. 228 248 IPR018362 GO:0003677|GO:0016602
Rops11g02492 402 MobiDBLite consensus disorder prediction 259 402 - -
Rops11g02492 402 PRINTS CCAAT-binding transcription factor subunit B signature 226 248 IPR001289 GO:0003700|GO:0006355
Rops11g02492 402 PRINTS CCAAT-binding transcription factor subunit B signature 257 280 IPR001289 GO:0003700|GO:0006355
Rops11g02492 402 MobiDBLite consensus disorder prediction 133 164 - -
Rops11g02492 402 Gene3D - 223 285 - -
Rops11g02492 402 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 225 280 IPR001289 GO:0003700|GO:0006355
Rops11g02492 402 MobiDBLite consensus disorder prediction 351 369 - -
Rops11g02492 402 MobiDBLite consensus disorder prediction 259 277 - -
Rops11g02492 402 SMART cbf3 222 283 IPR001289 GO:0003700|GO:0006355
Rops11g02492 402 MobiDBLite consensus disorder prediction 89 123 - -
Rops11g02492 402 MobiDBLite consensus disorder prediction 89 165 - -
Rops11g02492 402 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 64 337 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02492 Rops-Chr11 42597661 42603300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02492 65 328 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.226 1.72e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops11g02492 CBFB_NFYA 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02492 K08064 - gmx:100808378 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02492 11 42597661 42603300 Rops11g02492 11 42597661 42603300 ECH
Rops11g02492 11 42597661 42603300 Rops9g00148 9 1831642 1835263 PCT