Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02473 ATGGTGGTGCTCCAGGACTCTCTTGAGAAAGTCAAGTTGTACAATATTGAAAGGATAGATAATGCATCACTTAGTGGGGCACTATCGGCATGCCCTTCTCTTCTTGATCACGAAAATTGTTGGGCTCTAAGTAGAGATGACAGTTTGAAAACACAAACCTGTGTTGAGCTAGTGGACAATTGTCATTCAAGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCTTTCACAGGCTCTGGAAAAACTTTGGTCTTTGTGTTGCCCATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATAGTTCCTGGAGAAGGACCATTTGGAAGGCTGGATATCCAGAGCCGAGGCCTCTGCTTTGTATTGGTGGAGTGGACATGAGATCGCGGCTTGAGATTGTGAAGAAGGGAGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAACATGAATCTTGATTCTGTAGGTGTGGAAGCAAAGTGGCTGTTCATGGAGGCAAGGATCGAGGAGCAGAGAGAGTATGCCATTGCAGCTTTTAAAGCTGGAAACAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGAAGCAAAACAAAGGATTCCCCAGTTTGGCCGAAATTTGAATGATCCAATGGAAGATAATGAGGAAATTACAGATAAAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGATCATCAGAAGAGCATGGCAATAGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 846 0.4409 MVVLQDSLEKVKLYNIERIDNASLSGALSACPSLLDHENCWALSRDDSLKTQTCVELVDNCHSSARPSCYLIWAGYDWDCFHRLWKNFGLCVAHDHGGNAGGNYDAYSSWRRTIWKAGYPEPRPLLCIGGVDMRSRLEIVKKGVHIVVATPGRLKDMLAKKNMNLDSVGVEAKWLFMEARIEEQREYAIAAFKAGNKDVLVATDVASKEAKQRIPQFGRNLNDPMEDNEEITDKSGVKGCAYCGGLGHRIRDCPKLDHQKSMAIANNRKDYFGSGGYRGEI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02473 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 169 IPR027417 -
Rops11g02473 281 SMART c2hcfinal6 239 255 IPR001878 GO:0003676|GO:0008270
Rops11g02473 281 Pfam Zinc knuckle 239 255 IPR001878 GO:0003676|GO:0008270
Rops11g02473 281 Pfam DEAD/DEAH box helicase 122 169 IPR011545 GO:0003676|GO:0005524
Rops11g02473 281 ProSiteProfiles Zinc finger CCHC-type profile. 240 255 IPR001878 GO:0003676|GO:0008270
Rops11g02473 281 Gene3D - 209 263 - -
Rops11g02473 281 SUPERFAMILY Retrovirus zinc finger-like domains 239 260 IPR036875 GO:0003676|GO:0008270
Rops11g02473 281 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 168 - -
Rops11g02473 281 Gene3D - 80 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02473 Rops-Chr11 42303771 42305960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02473 127 168 Eukaryotic Initiation Factors Gene Family AT3G13920 42.857 1.31e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02473 K13116 - gmx:100819984 141.739