Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02462 ATGATGTATTCAAGAAGATCCAGGTATTCTCCTTCTCCTTCTCCTTCTCCACACAGGAGATACAGTCGGTCTGTGTCCAGGTCTCTTTCAAGGTCAAGATCCAGAAGCCGTTCAAGGAGCTTATCACGAGAAGCCGAAAATCCAGGAAATAATTTATATGTGACAGGATTGTCTCCTAGGATGACCAAGAGAGAACTTGAGAAACATTTTGCTGCCGAGGGAAAAGTGATCGATGTCCATCTGGTAGTTGATCCATGGACAAGGGAATCCCGTGGGTTTGGGTTTGTGACAATGGACACTGTTGAAGAAGCTGATCGATGCGTGAAGTATCTGAATAGATCTGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGTTTCTGTGGCAGCAGGCGAGAAGAGGACGTGGTCGAACCCCAACACCTGGGAGGTATCTAGGTCTGAGGACTATTCGCTCACGTCGTCGCTCTCCAAGCAACTCTCCTCGTCGCTCTCCTAGCTATTCTCCTTATAGAAGAAGCTACAGTCGTTCACCCTACTCTTCAGATCGTAGTAGGAGTCGTTCTTACTCTCCATATTACAGCCGGAGGAGGAGGTCCTACTCTCCATACCATAGCTGCCATAGCCGCCGGCGAAGGTCTTATTCTCCATACCATAGCCGCCGGCGAAGGAGGTCTTACTCTCGGTCTCGGTCCCCTTACAGCAGGTCACCTGTGAGCATACGTGACATATCATTTTCTCCTTATGACTCCAGATATGACTCACCTGATGATCGCCACTACAGAAGGCACCGCTACAGGTCAGCTTCGCGAAGTGTGTCACCCGAGCCAAGGAGAAGGTCAACGAGGAGTTATTCACGGAGTGCCTCTCCTGTTCGTCGTCGGAGGAGATACTCACCGAGTGAGTCCCCCAGGCCAAGGAGGAGATCTGGGAGGAGTTATTCAAGAGGCTCTAGAAAGAGTGATGGTTATTACTCCAAACATAGGTATTCCCGATCAAGAAGCTCGAGTGTGTGTGCAAGTTCAAGATCAGTGTCAAGGTCTAACACTCCTAAATCTGCCTCTCCTTCAACTTGA 1074 0.4953 MMYSRRSRYSPSPSPSPHRRYSRSVSRSLSRSRSRSRSRSLSREAENPGNNLYVTGLSPRMTKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMDTVEEADRCVKYLNRSVLEGRVITVEKFLWQQARRGRGRTPTPGRYLGLRTIRSRRRSPSNSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPYYSRRRRSYSPYHSCHSRRRRSYSPYHSRRRRRSYSRSRSPYSRSPVSIRDISFSPYDSRYDSPDDRHYRRHRYRSASRSVSPEPRRRSTRSYSRSASPVRRRRRYSPSESPRPRRRSGRSYSRGSRKSDGYYSKHRYSRSRSSSVCASSRSVSRSNTPKSASPST* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02462 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Rops11g02462 357 MobiDBLite consensus disorder prediction 159 188 - -
Rops11g02462 357 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Rops11g02462 357 MobiDBLite consensus disorder prediction 294 308 - -
Rops11g02462 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 124 IPR000504 GO:0003723
Rops11g02462 357 SMART rrm1_1 51 124 IPR000504 GO:0003723
Rops11g02462 357 MobiDBLite consensus disorder prediction 132 357 - -
Rops11g02462 357 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 42 285 - -
Rops11g02462 357 MobiDBLite consensus disorder prediction 1 56 - -
Rops11g02462 357 Gene3D - 4 133 IPR012677 -
Rops11g02462 357 MobiDBLite consensus disorder prediction 329 357 - -
Rops11g02462 357 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g02462 357 MobiDBLite consensus disorder prediction 251 282 - -
Rops11g02462 357 CDD RRM_SF 52 124 - -
Rops11g02462 357 MobiDBLite consensus disorder prediction 200 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02462 Rops-Chr11 41951780 41954126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02462 50 133 Eukaryotic Initiation Factors Gene Family AT2G23350 30.952 8.12e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02462 - - gmx:100808038 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02462 11 41951780 41954126 Rops11g02462 11 41951780 41954126 ECH