Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02460 ATGCAAATGAAGAAAACACCAGGCCCGAGTTTGCATCAGTCTAGCCAAAGAAAAAAGAATCCTGGTGTCCAAGATAGTAGCGCAGGCAATGGCCATGGCACACAGAGGAATCATACATATTTCAAGTCTTTTGTCAAGATATGTGCAAGTGTTTTTACATTGTTTATCCCTGGGAAAAGAAAAACAGTCTCAGAAGCTGCAGAAGGTGATGACAGAAAGAATACACACAAATTCAGAGGTGTATCATCTTCAACAGATATATCATCTGATAGTTCTAAGAGTTCATCAAAATGGAAGTTTTCTCAATCCTCCACATCATCTAGCACACCAAGTACACAGCTTGGAATGGGCAACTTTTCGTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTTTAGATAATAAGATTGGGGAAGGTGGGTTTGGAACAGTATATAGGGGAAAGCTTCATGATGGATCCCTTGTGGCTATAAAGCGTGCCAAGAAGGATATACAAAACAAGTACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAACATCGGAATCTTGTGAGGTGGTATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGAACTCTTCGGGAACATCTAGATGGCACTCGGGGAAATGGACTAGAAATTGGTGAGCGTCTAGATATAGCAATTGATGTAGCTCATGCAGTTACATACCTTCATATGTACACAGATCATCCAATTATTCACAGAGACATCAAAGCATCAAATATCTTAATCACTGACAATTTAAAGGCCAAAGTGGCAGACTTTGGTTTTGCCCGGTTGGCTGCAGAAGACCCTGCTGCAACCCATATTTCAACCCAAATTAAAGGAACAGCTGGCTATTTGGATCCTGATTACATGAAAACCCACCATCTCTCTGAAAAGAGTGATGTTTATTCCTTTGGGGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCCCTCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGGAGAAGTTGTGATTGCCATGGATCGAAGGCTGAGGAGAAGTCCAGCCTCAAACAAGGCTGTACAAAAGGTTCTCAAGCTTGCTTTTCAATGCCTTGCACCTGTGAGACAATCAAGGCCAACCATGAAGAGTTGTGCTGAGATTCTATGGGGTATCCGCAAAGATTTTATAGATAAAGCTGTTTCTAATTCTCCCCTTGGTTCTCACCATTCTGCAGATTTTCCTCAGAGAGATTCTAGAACTAATAGACATATGTCAAATGGTATTCAAGATGACAACCGTCATAAATTTGTCTCTACATAA 1368 0.3991 MQMKKTPGPSLHQSSQRKKNPGVQDSSAGNGHGTQRNHTYFKSFVKICASVFTLFIPGKRKTVSEAAEGDDRKNTHKFRGVSSSTDISSDSSKSSSKWKFSQSSTSSSTPSTQLGMGNFSFEEIYKATAKFSLDNKIGEGGFGTVYRGKLHDGSLVAIKRAKKDIQNKYLAEFKNEINTLSKIEHRNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGTRGNGLEIGERLDIAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDNLKAKVADFGFARLAAEDPAATHISTQIKGTAGYLDPDYMKTHHLSEKSDVYSFGVLLVEMMTGRHPVEPKRPLSERVTIKWAMQLLKQGEVVIAMDRRLRRSPASNKAVQKVLKLAFQCLAPVRQSRPTMKSCAEILWGIRKDFIDKAVSNSPLGSHHSADFPQRDSRTNRHMSNGIQDDNRHKFVST* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02460 455 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 417 - -
Rops11g02460 455 MobiDBLite consensus disorder prediction 422 455 - -
Rops11g02460 455 MobiDBLite consensus disorder prediction 63 79 - -
Rops11g02460 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 95 207 - -
Rops11g02460 455 MobiDBLite consensus disorder prediction 63 112 - -
Rops11g02460 455 Gene3D Phosphorylase Kinase; domain 1 89 207 - -
Rops11g02460 455 MobiDBLite consensus disorder prediction 6 35 - -
Rops11g02460 455 MobiDBLite consensus disorder prediction 428 455 - -
Rops11g02460 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Rops11g02460 455 ProSiteProfiles Protein kinase domain profile. 131 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02460 455 MobiDBLite consensus disorder prediction 80 112 - -
Rops11g02460 455 ProSitePatterns Protein kinases ATP-binding region signature. 137 163 IPR017441 GO:0005524
Rops11g02460 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 208 418 - -
Rops11g02460 455 SMART serkin_6 131 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02460 455 SUPERFAMILY Protein kinase-like (PK-like) 105 407 IPR011009 -
Rops11g02460 455 Gene3D Transferase(Phosphotransferase) domain 1 208 419 - -
Rops11g02460 455 Pfam Protein tyrosine and serine/threonine kinase 132 404 IPR001245 GO:0004672|GO:0006468
Rops11g02460 455 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02460 Rops-Chr11 41905296 41909540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02460 80 404 Trihelix Transcription Factor Family AT1G70460 39.577 1.81e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Rops11g02460 PK_Tyr_Ser-Thr 3.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02460 - - gmx:100815871 672.93