Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02443 ATGGCAACCATTGCCACGGTCTTCAACAAGTTCCTCTATCTTCTCGTCCTTCTTGTCCATCTTGGTTGCTTCCTCTTCACCACCACCGGAAAACAAGACGACGACAACAACAACCACTTGCCTCCACCATCATCAAAGAAACGAAAAATCTCACCTTTATCTCAACCCTCATCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCACTTTCTTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAATCCTCCAAAACCGCCGCCGCCGCCACAACCACCACCCATTCATCACCCCAATCCACCTCCACCACCATCACAACCGCCGCCAGATCCTCCCAGCAATCACTCATCTCCTTAACACAACCTGACCCTATTTTCCCGGATCCTCCACGCAAAAAACCATCCGGGTCATGCCCCGAATCCGATATCTCCACCGATAACAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCATGCACCACGTGCGGAGAAATCTTCCAGAAGCCCCACCTTCTAGAACAACACCAAACCACCCACCACGCTGTTTCGGAGCTTTTAGGATCCGACCCGGGTCACAACATAGTCCAAATCATATTCAAATCGGGTTGGCCCGAGACCCATGAGTTCCCGAAAATACACCGAATCCTTAAGATCCACAACAGCACGAAAATCCTTTCAAAATTCGAGGAGTACCGCGAAACGGTGATATCCAAGGCGGCGCGTCATTGCACGCGCCGACGTGACGAGCGGTGCATCGCCGACGGGAACGAACTCATGCGTTTTCACTGTTCCACTTTTCTATGTGACTTGGGACTCAATGGGGATTCTTCGATTTGTTCCCAACAATTTTGTAATATTTGTGGGATCATAAAATCGGGGTTCTCACCCAAGTTGGACGGAATTTCCACGCTATCAACTAGCTGGAGGGCACACGTGTCAATCCCTGAGGACATCGAGCGTGAATTTCGCTTCATGAACGTGAAGCGTGCAATGCTGGTTTGTCGGGTCATAGCGGGTCGGGTTGGATCCGATTCGGATGAGGTTGATAAAAATGATGGGGGTTTTGATTCTGTGATGGCGCGTGGAGACAGTGGGGTTTACACCCGCCTTGATGAGGAGGAGTTATTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGCATGTGA 1191 0.4996 MATIATVFNKFLYLLVLLVHLGCFLFTTTGKQDDDNNNHLPPPSSKKRKISPLSQPSSPSHPKFKTHKALSSSWHFIKHLFSTKSSKTAAAATTTTHSSPQSTSTTITTAARSSQQSLISLTQPDPIFPDPPRKKPSGSCPESDISTDNNLFFPLRNDIFPCTTCGEIFQKPHLLEQHQTTHHAVSELLGSDPGHNIVQIIFKSGWPETHEFPKIHRILKIHNSTKILSKFEEYRETVISKAARHCTRRRDERCIADGNELMRFHCSTFLCDLGLNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRAHVSIPEDIEREFRFMNVKRAMLVCRVIAGRVGSDSDEVDKNDGGFDSVMARGDSGVYTRLDEEELLVFNPRAVLPCFVIVYSM* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02443 396 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 72 394 - -
Rops11g02443 396 MobiDBLite consensus disorder prediction 91 123 - -
Rops11g02443 396 SUPERFAMILY ADP-ribosylation 186 395 - -
Rops11g02443 396 Gene3D - 184 395 - -
Rops11g02443 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Rops11g02443 396 MobiDBLite consensus disorder prediction 32 65 - -
Rops11g02443 396 MobiDBLite consensus disorder prediction 48 65 - -
Rops11g02443 396 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Rops11g02443 396 MobiDBLite consensus disorder prediction 91 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02443 Rops-Chr11 41662904 41664651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02443 74 396 C2H2 Transcription Factor Family AT2G29660 53.433 5.80e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g02443 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02443 - - gmx:100785244 584.334