Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02441 ATGAAAGGCATTGAAGGTGGTGGTGATGCCACTCCAATTCATGGGTATGGAAACATAAAGGTCACCAACCCTTCTATTTGTCGTTCTGGCCCTCCTTTGACAGCCATAGATAGGTTCTTATGGGGCCAACAACAACCACAGAATGTTGCTAACAACAGCCATGCAAGTGTTTTTGATGATAAGGTCTGCAGTTTTGATTGTTCTGGTGCTTCATCCTACACCTTTCTTTGGCCTAACTCTCAAGAAACAAGCTTTGTTGATAAGCTCTTAGCAAATGAAGAAGCCTTGAAATGGACTCACCAAATTCCTCCATTGTACCTACAAAAAGAAGATGTGGAAGTTTTAGGGAAGAGTGGGAAAGTGGTGGGACGAAGGCCTAAGAAAGGATCATCAATGTCTTTGATCAAAGGACAGTGGACTGAAGAAGAAGACAGGAAACTGTTGAAGTTGGTGAAGCAACATGGTGTGAGAAAATGGTCTCAAATAGCTGAGAAGTTGGTTGGAAGGGCTGGCAAGCAGTGTAGAGAGAGATGGCATAATCATCTCCGACCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAGAAAACCATGCCAAGATGGGAAATCGTTGGGCAGAGATAGCAAAGCTTATTCCAGGAAGGACAGAGAATGCTATAAAGAACCATTGGAATGCCACAAAAAGGAGGCTAAATTCAAGGAGAAAGAACAAAAAGCAAGGAAGCTCAAATGGAAAGCCACAATCCTCTATACTTGAAAACTATATAAGAACTCTCACTAGCACCACCACCACCACCACCTTCTCTAGCTCCATAACACCACCAATCTCAAAGGACCATGCAACAACACAATCCAACATTGTTTCTTCTCAACTCTCTGATACTGTTACTAATGAGAATTCCTCATCACCACTAATAGCTGAATCATTTGATGATGAGATTCTATTCATGCAACAACTCTTCAGGGAGAATCAGCAACCACTTAAGCACTCCAAGAACTCTTCAAATGGTGATCAGATTCTCACTGATGTCACTGAGTGTGGTGGGTTTGTTCATTCCAACCCTAAGCAAAACTCACACCCCATTATTTACCTTGATTCTGATCTCTACCTTTCTCACTTGCTGAATGGAACTGCCACTTCATCATCACGTGGCTGCAATTTTGAGATTCAAGACCAGAACGTGGACTTGAAGCTTGGGGGTCAGGATTGTTTAGAGGGAAAGAGAGAGATGGATTTGATAGAGTTGGTTTGTTCAGCTCAGTTTTTCCACTAG 1290 0.4209 MKGIEGGGDATPIHGYGNIKVTNPSICRSGPPLTAIDRFLWGQQQPQNVANNSHASVFDDKVCSFDCSGASSYTFLWPNSQETSFVDKLLANEEALKWTHQIPPLYLQKEDVEVLGKSGKVVGRRPKKGSSMSLIKGQWTEEEDRKLLKLVKQHGVRKWSQIAEKLVGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVENHAKMGNRWAEIAKLIPGRTENAIKNHWNATKRRLNSRRKNKKQGSSNGKPQSSILENYIRTLTSTTTTTTFSSSITPPISKDHATTQSNIVSSQLSDTVTNENSSSPLIAESFDDEILFMQQLFRENQQPLKHSKNSSNGDQILTDVTECGGFVHSNPKQNSHPIIYLDSDLYLSHLLNGTATSSSRGCNFEIQDQNVDLKLGGQDCLEGKREMDLIELVCSAQFFH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02441 429 CDD SANT 190 233 IPR001005 -
Rops11g02441 429 Gene3D - 189 256 - -
Rops11g02441 429 ProSiteProfiles Myb-like domain profile. 131 182 IPR001005 -
Rops11g02441 429 MobiDBLite consensus disorder prediction 227 256 - -
Rops11g02441 429 Pfam Myb-like DNA-binding domain 139 196 - -
Rops11g02441 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 186 IPR017930 -
Rops11g02441 429 CDD SANT 139 182 IPR001005 -
Rops11g02441 429 Gene3D - 135 187 - -
Rops11g02441 429 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Rops11g02441 429 SMART sant 187 235 IPR001005 -
Rops11g02441 429 SMART sant 135 184 IPR001005 -
Rops11g02441 429 MobiDBLite consensus disorder prediction 232 246 - -
Rops11g02441 429 FunFam Transcriptional activator Myb isoform A 135 188 - -
Rops11g02441 429 SUPERFAMILY Homeodomain-like 133 229 IPR009057 -
Rops11g02441 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 237 IPR017930 -
Rops11g02441 429 PANTHER MYB PROTEIN-RELATED 120 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02441 Rops-Chr11 41646441 41649213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02441 29 425 MYB Transcription Factor Family AT5G58850 37.558 8.24e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g02441 Myb_DNA-bind_6 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02441 K09422 - gmx:100786295 447.588