Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02430 ATGGTGATCCACTTACCAATACCATCAGCAAATGGAAAACTGGTTGCATGCAAAAGAAATTTTCCGGGAAAATATTTGGGTATGGGAAAGTGTTCATTTCAGGATTCTCTAAAAGCTTTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTAAGCTATCCAAGGGATAAAGATGGAGGATGCTTTCAGATGAGGCTATCATACAGTCCAGCAGCCCCATTTTTTCTGTTTCTTGTTCAATGGGCTGATTACCGCCTGGCTGGTGCTCTGGGTTTGCTGAGAATTATAATTTATGTGACTTATGGAAATGGGAAGACTACCATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTATTCGGTTATATTTCCTGCTCTATTACAACTTCAGAAAGGAATCACTGATTTGGAAGAAAGGAAACAGAAAGAAGTATATACTATTCGATACCAAAGGAAAACTGAGATTGGAGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCAAAAGTTGTGCTGCCTAATTGCTGTCACTATCTGTGTTTGAAGTGCTACAGAGATTGGTGTCTGAGGTCTGAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAAATCTGGGGACCTTTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGGACAGTTTTCAAAGAGAATTGTAAGATGCTGTTTCAGTAG 747 0.3963 MVIHLPIPSANGKLVACKRNFPGKYLGMGKCSFQDSLKALEADIQYANTLALSYPRDKDGGCFQMRLSYSPAAPFFLFLVQWADYRLAGALGLLRIIIYVTYGNGKTTMSIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEVYTIRYQRKTEIGERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYLCLKCYRDWCLRSESCPFCRDSLKRVKSGDLWIYTDTSDIVDVGTVFKENCKMLFQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02430 248 Pfam Zinc finger, C3HC4 type (RING finger) 171 217 - -
Rops11g02430 248 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Rops11g02430 248 FunFam RING/U-box superfamily protein 152 221 - -
Rops11g02430 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 222 IPR013083 -
Rops11g02430 248 PANTHER RING FINGER PROTEIN 41, 151 31 247 - -
Rops11g02430 248 SMART ring_2 174 211 IPR001841 -
Rops11g02430 248 SUPERFAMILY RING/U-box 161 217 - -
Rops11g02430 248 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02430 Rops-Chr11 41222873 41225563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02430 139 215 C3H Transcription Factor Family AT1G04360 29.268 5.18e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02430 - - gmx:100808567 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02430 11 41222873 41225563 Rops11g02430 11 41222873 41225563 ECH