Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02413 ATGTGCAGCGGTTCTAAGAGGAAACCCTTTCAAACAGGTTTGATTATGGAGGATGAGCATGTGAAACATGAAGGAATGCATCATAAAATTTCTGATTTGCTTGAGTTTTCAGCCTCAGATGATGTAATGGCTTTCAAAGATGCTGTTGAAAAAGAGGGTCATGATGTTAATAAGGTGGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGGGTTATGAAGAGAGGACCCCTCTTTTGATTGCTGCCATGTTTGGAAGCAAAGGTGTATTATCCTATATTCTTGAAACTGGTCTTGTTGATGTTAACCAGGCTTGTGGGTCAGAAGGGGCTACTGCCCTTCATTGTGCTGTTGCCGGGGGTTCTGCTGCTTCCCCTGAGGTAATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTGCCCTTGATGCCAATGGTAAGAGTTCCTGTGACTTGATTGTCCATATGTCTAATAGTATCTTCAATTCAAGGAAGATGATGCTCCAAGCCATACTAGAAGGTGCAGATGGTATCGATGAGACTTGTTTTACATTTAAGGAATCAGTTGGCCAAATGGTGAAACAGCAACAGCAAGATGTAAATGTGCCTCAGGTTTCAAAAGATGAGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCGGATATAAAGAATGGGATATATGGAACAGATGAGTTTAGGATGTTTATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAATATAATTATAGCTGTGTCCCTTGCCCGGAATTCCGGAAGGGTTCCTGCAGCAAGGGGGATGCTTGTGAATATGCACACGGTATTTTTGAGTGTTGGCTTCACCCTGCCCAGTATCGAACCCGGCTTTGCAAGGATGAGTCTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAGTTGGAGGAGCTTCGCCCCACATATGCTTCTACTGGTTCTGCTTTGCCTTCTCCCATATCATATTCAGCTAGTGCTTCTTCATTGGACCATTTCACACTGGGTTCTCCATCTGTTTTGGTACCACCTGCCTCAACACCACCTTTAACTCCATCTGGATCATCTTCTTCTGTGGGTGGAACCTTGTGGCAGACTCAGTCTCGTGCTGCAGTCCCTACCCTTCAGCTATCCAGAAGCAGATTGAAAACTGCATTGAATGCTAGAGATACTGATTTAGACATTGAATTGCTTGGACTCGAAAATCGCAGGCTTATGCAACAGCTAATGATGGAAGAGATGGTTGGTCTTTCATCCCCTTCCAAATGGAAAAATTCCATGCCTAACAGTCCATCTTTTATTGCCTCTTTGGGTGATCATACTGGGGAGTTAAATAGGCTTGCAGGAATGAAGCCTACTAACCTTGAAGACATTTTTGGGATACAATCTCCAACTGGAATCCAGGTGCATCAGAATGTGAACCAGCAACTGAGGGGCTATCCTTCCAACCTTTCCACTACAAATGTGATTGGATCACCATCATTCAGGGTTGATTCATCTGGGAATGCAGTAAATCCAAGATATGCTGCATTTTCAAATAGGAGCCAGAGTTTTGTTGAGCATAGTGTGATGAGCAGTAATTCTGAGATTCCTTCTGCTGCTACTGTTGCTGTAGAGTCTTCTACCTTCTCTGGTTGGGGCTCCCCTGATGGCAAATTAGATTGGGGCATCAATGGAGATGAACTGGATAAACTGAGGAAATCTTCTTCTTTTGGATTTAGAAACAGCAGTAGTCCTTTAACAATGGCTAAACCCACAGTGCCACCAAATGTTGATGAACCAGATGTATCTTGGGTTCATTCTCTTGTGAAGGATGCTCCACCAATGGAATCTGATCAGTATGGTGTTGAAGAGCAGCTGCAATACCATGATGGAACAGATGCAGTTCCAGCTAGAGTGGAGCAATTGTACATAGAGCAGGAGCAGATGGTGGCATGA 2025 0.4395 MCSGSKRKPFQTGLIMEDEHVKHEGMHHKISDLLEFSASDDVMAFKDAVEKEGHDVNKVGLWYGRRVGSKEMGYEERTPLLIAAMFGSKGVLSYILETGLVDVNQACGSEGATALHCAVAGGSAASPEVIKLLLDASADVSALDANGKSSCDLIVHMSNSIFNSRKMMLQAILEGADGIDETCFTFKESVGQMVKQQQQDVNVPQVSKDETEKKDYPVDLSLPDIKNGIYGTDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYNYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKLEELRPTYASTGSALPSPISYSASASSLDHFTLGSPSVLVPPASTPPLTPSGSSSSVGGTLWQTQSRAAVPTLQLSRSRLKTALNARDTDLDIELLGLENRRLMQQLMMEEMVGLSSPSKWKNSMPNSPSFIASLGDHTGELNRLAGMKPTNLEDIFGIQSPTGIQVHQNVNQQLRGYPSNLSTTNVIGSPSFRVDSSGNAVNPRYAAFSNRSQSFVEHSVMSSNSEIPSAATVAVESSTFSGWGSPDGKLDWGINGDELDKLRKSSSFGFRNSSSPLTMAKPTVPPNVDEPDVSWVHSLVKDAPPMESDQYGVEEQLQYHDGTDAVPARVEQLYIEQEQMVA* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02413 674 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Rops11g02413 674 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Rops11g02413 674 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Rops11g02413 674 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Rops11g02413 674 Gene3D - 26 175 IPR036770 -
Rops11g02413 674 Gene3D - 275 337 - -
Rops11g02413 674 PANTHER UNKEMPT FAMILY MEMBER 35 635 IPR045234 -
Rops11g02413 674 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Rops11g02413 674 SMART ANK_2a 75 105 IPR002110 GO:0005515
Rops11g02413 674 SMART ANK_2a 110 142 IPR002110 GO:0005515
Rops11g02413 674 SUPERFAMILY Ankyrin repeat 53 152 IPR036770 -
Rops11g02413 674 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Rops11g02413 674 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Rops11g02413 674 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02413 Rops-Chr11 40999987 41003142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02413 28 635 C2H2 Transcription Factor Family AT5G12850 39.013 1.19e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g02413 Ank_2 3.9e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02413 - - aprc:113846970 922.924