Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02407 ATGGATTCGGATCATGCTTCTGGGGTTAACCCTGGTGAGGATCATGCTGAGTTCTTGAACCAGTTGAAGCTCTTCAAAGACAATTCTTTATCTGTTGAGGAAGTTGAATGTGCCCTTGATCATGTTTACAAGGTTTATGAAGAGCACCCCACAAGCAGAAACATCATGAGTAATGCAGATATTGTTTTGTTCATAGTGACTCTTCTTGGCAATAACTCTAAAACTATGGGATCACGTTTGAGAAGCAAAGCTCTAATGATTTTACTTAACATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTCTTGGAAGCTCTGAGAAAGAGAGAGAGTATGCTGTCAAGTTATTACTAGAGTTCTGCAGTGATGAAGATTGTTGCATGAGAATTGCATCAGAGAAAGGTGCATTAGTTCTTCTCTCAAGCATGGCAGGAAATCTGGAGTATCCATCTTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAAGGTGGATGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTGGAACCATTACTTCTACGGTTACGTGATGGTTCTGATGGTGTAAAGATGGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTCTAAAGAACAAATTGCCAGGCAAAGTGCCAAAATATTTGTTGAACTGCTGTCTAATCCAGAAGGAAGGGGACCAAGTTTGCAAGCATTATATAACTTGTCTCGATTGGATGACAATGCAACCATCCTTGTTGAGTCTTCAGTCCTTCCATCTCTTATAGAAGTTCTGTTTGATGAGCAGGATTCTTCATATGAGTTGAAGTCATTAGCTGCTTCAACAATTGCAAATATAGTATCTAAGCCAGGGAATTGGGAATTAGCATCTGCTGACAAGAACGGAAATCCAATGCAGTCAGAAAATATTGTGTTCAGACTTTTGGGGCTTTTAAACTGTCTGCCCTCTCAGTGTCAAGTGGATGTTCTTCGCATTCTTTGTGGAATTGCATCATCTCCTCAGGCATCAGAATTAGTAGCAACTCATATCATGTCAGGGGGTGGCATTGGAATGGTCACACCATTTCTTCAACACCCAGAAGTTGAACATAGAGTGCTTGCTTTCAAGCTTACAAGACTGCTATCTGAATGGTTTAGTCAAGATATTGCAAATGAGCTGAGACTTTCAAACAAGCTTAGTATACTTAAAGAAAAACTATTAGATAACCAATCTACAAAAGATGAGAGATCAGATGCAGCACAGATACTTGCCAATCTTTCCCTCTCAGAAGATGAAATGGAGACACTTTTTGGAGTTGAATTTGTGAGATGGATTGTTGATACTCTAAAGAACCAGAGGCGTGTTTCCAGTGCAAGGTTTTCACATACTGCATCAGGCATGCAGGAAGGTCTTCTAGGTCTCTTGCTTCATTTCACTAGGGACCTTGATCAGCAAACTCTTAATGTAGTTAGAGAAAATCATCTTATGGCCATTTTGTGTGAGCAGCTGGATTACAATTCAAACCCAAAGGTAAAACAACTTGCTGCTGTTGGATTGAAAAACTTATCAGAATTTGGAAGGTCAGTTATTGCTAAGGACTCTGAACTGCAATCTCCAAATGGGTTCTGCTCTTTCCTGGTGCTCATGTGTGGAAGAGCCTCAAGTCAACCTTCCACATGTCCCATTCACAATAGCCCTTGTGAGGAAGATAGTCAGTTATGCTTGCTCAAGAGCAACTGTATCAAGCCACTGGTTGATATCCTCAATGAAAATGACACTAATGTTCAGCTTGCTGCAGTGGAAGCACTATCTACTCTAGTATTAAATTACACATCTCCTAGTTTCAAAAGAGCTGTTGATGAACTTGAGCAATTGGGTGTGGTTGATTCTTTGATCACACTTTTTACAAATGTTAGATCTGAGGAGCTTCAGGAGAAGACAATTTGGATATTAGAGAAGATATTGAGAGTGGATAATCTCAGCCATAGGCATGCACTCAATCAGTCTCTTGTGAGAGGCTTGGTTGAAGCCTTTACACATGGGAATACCAACACAAAGAAACATGCTCAAGATGCTCTCATCCTCCTAAAGGAGTTATCAGCTGTTAGTGGAAAGACATCAAGTCAACCTCAAACTCAGAGATAG 2181 0.4067 MDSDHASGVNPGEDHAEFLNQLKLFKDNSLSVEEVECALDHVYKVYEEHPTSRNIMSNADIVLFIVTLLGNNSKTMGSRLRSKALMILLNMAKDEESRKIMLERGITRLAVHSLLGSSEKEREYAVKLLLEFCSDEDCCMRIASEKGALVLLSSMAGNLEYPSLSNLAEEVLRQMEKVDDNVQCLAAAGRLEPLLLRLRDGSDGVKMEMASLVGRMTLTNSSKEQIARQSAKIFVELLSNPEGRGPSLQALYNLSRLDDNATILVESSVLPSLIEVLFDEQDSSYELKSLAASTIANIVSKPGNWELASADKNGNPMQSENIVFRLLGLLNCLPSQCQVDVLRILCGIASSPQASELVATHIMSGGGIGMVTPFLQHPEVEHRVLAFKLTRLLSEWFSQDIANELRLSNKLSILKEKLLDNQSTKDERSDAAQILANLSLSEDEMETLFGVEFVRWIVDTLKNQRRVSSARFSHTASGMQEGLLGLLLHFTRDLDQQTLNVVRENHLMAILCEQLDYNSNPKVKQLAAVGLKNLSEFGRSVIAKDSELQSPNGFCSFLVLMCGRASSQPSTCPIHNSPCEEDSQLCLLKSNCIKPLVDILNENDTNVQLAAVEALSTLVLNYTSPSFKRAVDELEQLGVVDSLITLFTNVRSEELQEKTIWILEKILRVDNLSHRHALNQSLVRGLVEAFTHGNTNTKKHAQDALILLKELSAVSGKTSSQPQTQR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02407 726 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 31 716 - -
Rops11g02407 726 SMART arm_5 49 93 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 579 620 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 257 300 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 494 536 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 94 134 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 627 668 IPR000225 GO:0005515
Rops11g02407 726 SMART arm_5 219 256 IPR000225 GO:0005515
Rops11g02407 726 Gene3D - 20 538 IPR011989 -
Rops11g02407 726 Gene3D - 575 724 IPR011989 -
Rops11g02407 726 SUPERFAMILY ARM repeat 22 463 IPR016024 -
Rops11g02407 726 SUPERFAMILY ARM repeat 371 706 IPR016024 -
Rops11g02407 726 Pfam Armadillo/beta-catenin-like repeat 586 618 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02407 38 705 U-box Gene Family AT1G20780 26.301 2.66e-54 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02407 - - gmx:102659945 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02407 11 40953705 40957964 Rops11g02407 11 40953705 40957964 ECH