Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02402 ATGGCGGCGGAGGGTGTGAAGAATTCTAGTAACATGAAGCGTAAAAAAGGGTTTAGTGAAAGAAAGCTTCTAATCAATGAAAGAGTGGAGGTGAGGAGTTTAGAGGAGGGTTTTCTGGGATCCTGGCACCCGGGGACAGTTATCCAATGTGAGAAGCTAAAGCGCCATGTCAGATATGAGAATGTTCTAGAAGACGATGGGTTAAATCATCTTGTGGATGCAGTGGATGTTTCGAATGCTTTGGATGGTTATAATGATTCTTCAGATTACTATAAACGTGGGTTGATTAGGCCACTGCCTCCTTGGATTGAGTTTGAGAAAAGGGATCTTAAATATGGTCTGTGTGTTGATGTGAACCATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGACCACTGTGATGGAATGGATGAGAGGAGTGTATTTTTCCCAGATTTGGGTGATGAAATGAAGATTAAAATTCATCAATTGAGGATCACTCAGGACTGGGATGAAGTTACAGAGAAGTGGGAGAAACGAGGGAACTGGGTGTTTCTTGAATTGATTGAGGAATGTGAGAGGGAATCATATGTTGCAGTTTCAGAAAAGCAAATTTGGTATGATATACGGGGAAAAAAGGATTTTGGCTTGATTGGAGAGTGGACATTTAATGTAAAGGACTTATGGAGAGACATGGTAATGGAGGTAGTTAGTGATTACTGGACTCTTACAGTAAATGAAGTTTTCTCTGCCATAAACCTTCCAAAGGGTTTATTAAATGAAACACCAGAGCTGGATTCAGTTGAACTTATGTCTAATGTTGACTTTAATATGACCTTGCCTGAAAAGGAAATTCTTGAGCAGAAAGAACCTGCTCTTCCTGTTAAAGAGGACTTACCTAAGTTTCAAAAAGAAATTTCCTGCTATGGTGCTGGTAAAGTAGTTTCAGGTGCTACCTGGTTTGAAAAAAACAGAGAACATAGATCATCAACTCGTTCAAGGTCTGTTATTTGGAAACCTCTGAAATTGTCTGACATTGAATTCTGTCCCGATGCCGTTAAGCAATATGCACTTGCTTATAAGAACCCGGAGAATAGGGCATTTTGGAAGGAAAAACTACAAAAACATCTTGCATATCTTGGATGGCAAATTGAGTGGACAAGTAGATTTTGTGGTAAACGTTACAAGTACAAGTCGCCTGATAAAGAGGGCCAGAAGGTTTACCTCTCACTCATTGAAGTTTGTAAAGTTATGCAAAAGGAATCCCAAATGAACTCTTTGCTGTCCCAAAATGATCAGAGTATAGTGCATCCTCCAGATGATTGTCATCTTTCACATGTGCTTCTTAATCCTTCAGAAACGATTCAGGACCTAGATGTCTGTTCTCCAACTGAGCTGCCTCCTTCTGTTGAAGTTGGAGATGAACCAGAGTTTTGTCCTCAAGCTGTTGAAGTTGTAGATGAACCGGAGTTTTGTCCTCAAGCTGTTATGGAATACTACCAAGCATTCAAGGAGAACCGCACTGATAAAAGAAAATGGATACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATTTTTGAATATCCACCTCCAAATAATAAAAAAAGGGGAATTAAGTACATGTCTCCTCAAAATCGGAATTTCCTGACACTCCACGCAGCATGCCACTTTTGTATGGAAGAAAGTAATCCTAAATGGACTATTTCTGGCATGCAACCTTTAAATGTCTCAGCCATTAATGAGGAAAATGTTGATCAGGTGTGGAGTGCTGATCTGTTGTGTAAAGTAAGCCAATTGCTTCCAAAGAAACCTGATTTACATACTACAGATGGTATTGCCGCATATAGATCAGCTGCAAATCTGAAACGGAAACGCTTAAGGAATTCAAAGGCCAGCCTACCTAAGTGCCAAAGCAATGGATTACCTCTTCGGGTGCTACGATCAAGTAAAAGGGTGCAAAAGGTGTCTGCCTCTTCTCTGTCACGCCATAAACCTCTTAATGTTCTGTCTTGGTTGATAGACAATAATGCGGTGTTACCAAGGTCTAAGGTTTATTATCAGGCAAAAGGCAGGCGCCGTACTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAGTGTAGCTGTTGTCAGAGAATATACAGTCTAATTGGTTTTGAAAAGCATGCTAATGGCAGTAGTACCCGCAGACCTGCTGCTAGTATCTTTTTGGAAGATGGTAGGTCGCTTTTAGACTGCCAGATACAAATAATGCAAAATCATAAGACTAGTGAAACTATGGAAAAGCCATTCAGTGAATTGTGTCAAGGCGAGAATGACTACATTTGTTCTGTTTGCCACTATGGTGGTGAACTTATCTTATGCGATCAATGCCCGTCTTCATTTCATAAGATGTGTCTTCGTTTGGAGGATATTCCTGATGGTGAATGGTTTTGTCCATCATGTCGTTGCCGAATTTGTGGTCAAAAGAAAATCAATGAAGATGAGGATGACCATGTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTAGGTGCATAAAAAATAGAGCTGTAGATAAATCAAGAGGATGTCTGGAAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATATGCAGGCCTCCATAAACTATTAGGAGAGCCAGTTTCAGTGGGTGGGGACAATTTAACTTGGACGTTGATGAAGTTTGACAACTCTGAGAGTTGTGATATTGGTAGTACTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCAATGATGCATGAATGCTTTGAGCCCCTAAAGGAACCTTTCTCTAGCAGAGATCTCACGGATGATGTTATATTCAGCAGAAGGTCAGAACTAAATCGATTAAATTTCCAGGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAACTGATTAGTGTGGCAACTGTTAGGATCTATGGAGGGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAGTATCGTCGACTTGGAATGTGTCGGATTTTAATGAATGAGCTTGAAAAGAAGCTCACGCAATTAGGAGTGGAGAGGCTTGTTTTGCCTGCTGTTCCTAGCGTGTTAGATACATGGACCGGTGCTTTTGGCTTTTCAAAGATGACAAATTTTGAGAGATCACAATTTCTGGACTACACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGATGAAGATTCCATCTCCTCATTCAGTTTTGTCAATAGAGTTCCAACAAAAACACGATGCTTTATCAGGAAGTTGTAGGGCTAACTTTGATAAGTCTAGTCCAGTATCTGAAGTATTGCAAGCAGGAGAGATTGACAAAAGAGGGATACCGAGTCAACAAATGGGGGATACTTGTGCAGGCAATAATGATCATGATCCTCTTGGCAGTGGTGCTATTGACCCTGTCATTATGGTGAACCAACCAAGTCCTGAGGATCAACAGTACCAGAATGGAACCAGTCCACAATGCTCTTTTGTAAAACAAGCTGAAAGGTATAATGGCTCATGTTACAGGAGGAGGAAAGTGAGAAAGGTTGAGTAG 3561 0.4058 MAAEGVKNSSNMKRKKGFSERKLLINERVEVRSLEEGFLGSWHPGTVIQCEKLKRHVRYENVLEDDGLNHLVDAVDVSNALDGYNDSSDYYKRGLIRPLPPWIEFEKRDLKYGLCVDVNHQEAWWEGVIFDHCDGMDERSVFFPDLGDEMKIKIHQLRITQDWDEVTEKWEKRGNWVFLELIEECERESYVAVSEKQIWYDIRGKKDFGLIGEWTFNVKDLWRDMVMEVVSDYWTLTVNEVFSAINLPKGLLNETPELDSVELMSNVDFNMTLPEKEILEQKEPALPVKEDLPKFQKEISCYGAGKVVSGATWFEKNREHRSSTRSRSVIWKPLKLSDIEFCPDAVKQYALAYKNPENRAFWKEKLQKHLAYLGWQIEWTSRFCGKRYKYKSPDKEGQKVYLSLIEVCKVMQKESQMNSLLSQNDQSIVHPPDDCHLSHVLLNPSETIQDLDVCSPTELPPSVEVGDEPEFCPQAVEVVDEPEFCPQAVMEYYQAFKENRTDKRKWILKAKKHLLAEGWIFEYPPPNNKKRGIKYMSPQNRNFLTLHAACHFCMEESNPKWTISGMQPLNVSAINEENVDQVWSADLLCKVSQLLPKKPDLHTTDGIAAYRSAANLKRKRLRNSKASLPKCQSNGLPLRVLRSSKRVQKVSASSLSRHKPLNVLSWLIDNNAVLPRSKVYYQAKGRRRTMAEGRITRDGIKCSCCQRIYSLIGFEKHANGSSTRRPAASIFLEDGRSLLDCQIQIMQNHKTSETMEKPFSELCQGENDYICSVCHYGGELILCDQCPSSFHKMCLRLEDIPDGEWFCPSCRCRICGQKKINEDEDDHVLTCIQCEHKYHVRCIKNRAVDKSRGCLENWFCGKDCEKIYAGLHKLLGEPVSVGGDNLTWTLMKFDNSESCDIGSTKSDLLAESYSKLNVALSMMHECFEPLKEPFSSRDLTDDVIFSRRSELNRLNFQGFYTVLLERNEELISVATVRIYGGKVAEVPLVGTRLQYRRLGMCRILMNELEKKLTQLGVERLVLPAVPSVLDTWTGAFGFSKMTNFERSQFLDYTFLDFQGTIMCQKLLMKIPSPHSVLSIEFQQKHDALSGSCRANFDKSSPVSEVLQAGEIDKRGIPSQQMGDTCAGNNDHDPLGSGAIDPVIMVNQPSPEDQQYQNGTSPQCSFVKQAERYNGSCYRRRKVRKVE* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02402 1186 CDD Tudor_Agenet_AtDUF_rpt1_3 27 101 - -
Rops11g02402 1186 Pfam PHD-finger 770 812 IPR019787 -
Rops11g02402 1186 Gene3D - 921 1066 - -
Rops11g02402 1186 ProSiteProfiles Zinc finger PHD-type profile. 768 813 IPR019787 -
Rops11g02402 1186 SMART agenet_At_2 21 104 IPR014002 -
Rops11g02402 1186 SMART agenet_At_2 108 165 IPR014002 -
Rops11g02402 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 867 IPR013083 -
Rops11g02402 1186 Pfam Agenet domain 27 101 IPR008395 -
Rops11g02402 1186 CDD NAT_SF 962 1022 - -
Rops11g02402 1186 SMART PHD_3 770 811 IPR001965 -
Rops11g02402 1186 SMART PHD_3 812 864 IPR001965 -
Rops11g02402 1186 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 906 1073 IPR000182 GO:0016747
Rops11g02402 1186 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 931 1041 IPR016181 -
Rops11g02402 1186 CDD PHD2_CHD_II 771 810 - -
Rops11g02402 1186 Pfam Tify domain binding domain 693 744 IPR032308 -
Rops11g02402 1186 PANTHER PHD FINGER PROTEIN 12 481 1131 IPR042163 GO:0003714|GO:0045892
Rops11g02402 1186 SUPERFAMILY FYVE/PHD zinc finger 750 811 IPR011011 -
Rops11g02402 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 812 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02402 Rops-Chr11 40832330 40843132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02402 18 431 PHD Transcription Factor Family AT5G58610 36.111 1.27e-66 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops11g02402 Agenet 1e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02402 - - aprc:113851199 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02402 11 40832330 40843132 Rops11g02402 11 40832330 40843132 ECH
Rops11g02402 11 40832330 40843132 Rops9g01271 9 21123438 21128790 PCT