Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02399 ATGAGCAACATGTCTTGCTCTGTTGCAGTTTCAAGTTCACCTGCGTTTTCTCTCTCTTCTTCCCGCTTCTATAGCAAAAGCTCCATCATTTCTTCGTCCTCTGAACCACTCATGCTAGCGCTTCCTCCTTCTACGACGCCGTCTTGTTCTTCTTCACCCTCCTCGCCGGTTTTGAAGAGGAAGAAACCCTCCAAGCTTGAAATACCCGTTGCTTCTTTTCCTTTTGCGGCTGTGGCGCCGTCTCCGTCGCTGGCGACGGAGGTCGTCGAGGTGGAGGAACGTGGGTTTTCTGTGTATTGCAAGAGAGGAAGGAGGAAAAACATGGAAGATCGTTACTCTGCTGCTGTTGATCTTCATGGAGAACCAAAACAGGCTTTTTTTGGCATATTTGATGGGCATGGAGGTACAAAAGCTTCTGAATTCGCTGCACATAACTTGGAAAAGAATGTGTTGGATGAAGTGATAAGGAGAGATGAGAGTGATATTGAGGAGGCAGTGAAGAATGGTTACCTCAACACTGATTCTGATTTCTTGAAAGAGGATCTTCATGGTGGCTCTTGCTGTGTAACAGCATTGATTAGGAATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGTCGTGCTGTTATTAGCAGAGGGGGTGTTGCTGAGGCCCTCACATCTGACCACAAACCTTCAAGGGAAGATGAAAGGGACAGGATTCAGACTCAAGGTGGCTATGTTGATATATGCCGTGGTGTTTGGAGGATCCAAGGATCTCTAGCTGTTTCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTAATCAGGATTGAACCTCAAGATGACATGTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAAGAAGCAACAGATATTGCTCGTCCTTTATGTGTTGGGACCAATAGACAACAATCATTGTTGGCTTGTAAGAAGCTTGTAGATTTGTCTGTATCAAGAGGCTCTATTGATGATATAAGTGTTATGATTATCAAATTGCAGAACTATATTTGA 1053 0.4425 MSNMSCSVAVSSSPAFSLSSSRFYSKSSIISSSSEPLMLALPPSTTPSCSSSPSSPVLKRKKPSKLEIPVASFPFAAVAPSPSLATEVVEVEERGFSVYCKRGRRKNMEDRYSAAVDLHGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVIRRDESDIEEAVKNGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHKPSREDERDRIQTQGGYVDICRGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKVIRIEPQDDMLILASDGLWEKVSNQEATDIARPLCVGTNRQQSLLACKKLVDLSVSRGSIDDISVMIIKLQNYI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02399 350 ProSiteProfiles PPM-type phosphatase domain profile. 95 346 IPR001932 -
Rops11g02399 350 Gene3D - 86 350 IPR036457 -
Rops11g02399 350 SMART PP2C_SIG_2 111 346 IPR001932 -
Rops11g02399 350 FunFam probable protein phosphatase 2C 25 88 349 - -
Rops11g02399 350 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Rops11g02399 350 SUPERFAMILY PP2C-like 95 348 IPR036457 -
Rops11g02399 350 MobiDBLite consensus disorder prediction 41 61 - -
Rops11g02399 350 PANTHER PROTEIN PHOSPHATASE 2C 59 345 IPR015655 GO:0004722|GO:0006470
Rops11g02399 350 SMART PP2C_4 88 344 IPR001932 -
Rops11g02399 350 MobiDBLite consensus disorder prediction 41 58 - -
Rops11g02399 350 Pfam Protein phosphatase 2C 96 339 IPR001932 -
Rops11g02399 350 CDD PP2Cc 94 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02399 Rops-Chr11 40718483 40720517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02399 4 350 PP2C-type Phosphatase Gene Family AT2G30020 59.343 3.84e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02399 K17506 - gmx:100813073 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02399 11 40718483 40720517 Rops11g02399 11 40718483 40720517 ECH
Rops11g02399 11 40718483 40720517 Rops9g01268 9 21049079 21051353 ECH
Rops11g02399 11 40718483 40720517 Rops9g01268 9 21049079 21051353 PCT