Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02393 ATGCCAACAGAATCTGAACCACCCATGAACACATTGAGTCAAATGTTTCAAAACATTTTCTCAGATAACAGTAACATCATGCTTGCAGCTATCATTTCCTTGTTACTAGTTATCCTCTTTGTTCTACTACTTCATCTCTATGCTAAATGGTTCTTGGCTCAAGCACATGCACAGGCACAAGCACGGAGGCGCCGTCGCCGGAGAACCACCGTGATGGTCTCCGACGTCCTTGGCCCTGCAAGGTTCCATCACTTCCATAGCTTCAACATAGAAGACTCACCCATCTCAAGTTCACACACCAAAGGGCTTGATTCTGCTATCATTGCTTCAATTCCACTGTTCATTTATGCAGCACCTGCAGAAGTAGAAAAGGGTGGTAATGATGATTATGATGAAGATGATGAGCATAGCAAGGTTGAACAAGAGCTAGAATGTGTGATTTGTTTGAATGCTTTTGAAGATGGTGAAATGGGAAGGTGTTTGCCAAAATGTGGCCATGGTTTTCATGTGGAGTGCATTGATATGTGGTTGAGTTCACATTCCAATTGTCCAATTTGTAGAGCTCCAATTGTGGGTGGTGTTGTTGAGAATGATTCTTCAGCTTCTGATTTGGTTGAGATTGTGATTGGTGATACTTCTCCAAGTTCTGAGATTAGACAGAGTGAGCATGGGAATGATAATGGAGTGGTGAGTGGTTCTATGTCAGAAACTCCATCCTCCTTGTTTGGTTGCTCTTTGAAGACAATGTTAAGGAAAGTTTTCCCATCTTCCAATGTAAATGAATCACATGCTTAA 795 0.4201 MPTESEPPMNTLSQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHAQAQARRRRRRRTTVMVSDVLGPARFHHFHSFNIEDSPISSSHTKGLDSAIIASIPLFIYAAPAEVEKGGNDDYDEDDEHSKVEQELECVICLNAFEDGEMGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVGGVVENDSSASDLVEIVIGDTSPSSEIRQSEHGNDNGVVSGSMSETPSSLFGCSLKTMLRKVFPSSNVNESHA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02393 264 CDD RING-H2_EL5-like 144 187 - -
Rops11g02393 264 SMART ring_2 145 186 IPR001841 -
Rops11g02393 264 FunFam RING-H2 finger protein ATL1 89 192 - -
Rops11g02393 264 MobiDBLite consensus disorder prediction 212 233 - -
Rops11g02393 264 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 191 IPR044675 -
Rops11g02393 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 191 IPR013083 -
Rops11g02393 264 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Rops11g02393 264 SUPERFAMILY RING/U-box 137 191 - -
Rops11g02393 264 MobiDBLite consensus disorder prediction 213 233 - -
Rops11g02393 264 Pfam Ring finger domain 144 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02393 Rops-Chr11 40610267 40611061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02393 18 214 Rapid Response to Elicitors AT3G16720 33.333 4.51e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02393 - - lang:109329145 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02393 11 40610267 40611061 Rops11g02393 11 40610267 40611061 ECH
Rops11g02393 11 40610267 40611061 Rops9g01261 9 20941486 20943720 PCT