Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02392 ATGGTGATTTCTCCCATGCAAGAACATCAATGGGTTAGGATTGATTACACAAACTACCATACTATGTTCCCATGTTCAACAAACAAGGGCATCAACATGGTTGGTGATGGTTTTGAGAAGAAAGAATGTTGCATATGTTTGAGTCTTTTCCAAGATAATGAAAAGCTGAAGGTGTTAACAGAATGTAAGCATGCTTATCATTCTGAGTGCTTGGACTTGTGGCTTAGTGCTCATCCTAGTTGCCCTCTTTGCAGGGCCTCTCTCCATGTTAGTAATTCTATGAAGAAACCAGTTATTTCTTAG 303 0.3927 MVISPMQEHQWVRIDYTNYHTMFPCSTNKGINMVGDGFEKKECCICLSLFQDNEKLKVLTECKHAYHSECLDLWLSAHPSCPLCRASLHVSNSMKKPVIS* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02392 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 99 IPR013083 -
Rops11g02392 100 ProSiteProfiles Zinc finger RING-type profile. 43 85 IPR001841 -
Rops11g02392 100 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 90 IPR044675 -
Rops11g02392 100 SMART ring_2 43 84 IPR001841 -
Rops11g02392 100 Pfam Ring finger domain 41 85 IPR001841 -
Rops11g02392 100 SUPERFAMILY RING/U-box 42 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02392 Rops-Chr11 40583491 40583793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02392 35 86 C3H Transcription Factor Family AT5G17600 52.830 2.84e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02392 - - lja:Lj0g3v0098519.1 157.147