Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02388 ATGTCCCCTTTTCCTAAGCCTGGCAACAAGGAGGCTGAGTTGAAGGGGAAGAGGGTGTTTGTGAGGGTTGATCTGAATGTCCCTTCGGATGAGAACCCGCACACCACTGATGACACAAGAATCCGTGCTTCTGCCCCCACCATCGAGTACTTGACCGGTTATGGTGCCAAGGTCATCCTTGCTAGCCATCTGGGACGTCCAAAGGGTGTAACACCTAAATACAGTTTGAAGCCTATTGCCCCAAGGCTGTCTCAACATCGTGGAGTTGAGGTTAAGATAGCCAATGACCGTATTGGGGAGGAAGTGGGGAAGTTGGTTGCACAATTACCAGAAGGTGGTGCTTTGCTTCTAGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAATGATCCTGAATTCGCAAAGGGGTTGGCCGCTCTTGCTAATGTCTATGTGAATGATGCATTTCGCACTGCCCACAGAGCTCATGCTTATACAGAAGGTGTGGCTAAATACGTGAGGCCTGCTGATACCGGGAGGCCATTCCGAGCTCTCCTTGATGTTGGTCTTATTAAGACCACAACTGGCAACCGCGTCTTTGGTGCCTTGAAGGGAGCTCTAGATGGGGGTTTGGATATTCCCCACAATGACAAAAGGTTTGCTGGTTTTCAATAA 654 0.4939 MSPFPKPGNKEAELKGKRVFVRVDLNVPSDENPHTTDDTRIRASAPTIEYLTGYGAKVILASHLGRPKGVTPKYSLKPIAPRLSQHRGVEVKIANDRIGEEVGKLVAQLPEGGALLLENVRFYKEEEKNDPEFAKGLAALANVYVNDAFRTAHRAHAYTEGVAKYVRPADTGRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHNDKRFAGFQ* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02388 217 FunFam Phosphoglycerate kinase 10 181 - -
Rops11g02388 217 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 164 209 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops11g02388 217 Pfam Phosphoglycerate kinase 11 168 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 SUPERFAMILY Translational machinery components 171 216 - -
Rops11g02388 217 ProSitePatterns Phosphoglycerate kinase signature. 18 28 IPR015911 GO:0004618|GO:0006096
Rops11g02388 217 PRINTS Phosphoglycerate kinase family signature 35 57 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 PRINTS Phosphoglycerate kinase family signature 13 29 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 PRINTS Phosphoglycerate kinase family signature 112 127 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 PRINTS Phosphoglycerate kinase family signature 140 162 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 PANTHER PHOSPHOGLYCERATE KINASE 11 180 IPR001576 GO:0004618|GO:0006096
Rops11g02388 217 Gene3D - 8 172 IPR015824 GO:0004618|GO:0006096
Rops11g02388 217 SUPERFAMILY Phosphoglycerate kinase 11 175 IPR036043 GO:0004618|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02388 Rops-Chr11 40415478 40421028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02388 166 217 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 86.538 1.21e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02388 K00927 - atri:130803457 265.774