Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02359 ATGGGGGGTTCTTCACCTTGTGCTTCCTGCAAATTGTTGAGACGCCGTTGCACCGAAGAATGCATCTTTGCCCCTTATTTTCCTTCTGATGATCCCCGCAAGTTTGCCATTGTGCATAAAGTCTTTGGTGCTAGCAATGTCAGCAAAATGCTTCAGGAGCTTCCAATTCACCAAAGAGCAGATGCTGTAAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTTGGAGCCATATCATACCTGCAAAACCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGAGTCTCTGCATCCAGATGCAGCAAGAGCCTACCTTACCCACACAGGTTGACCAAGATGACAAATCACTGCTCCTATCTGACAACAATAATTATGAAATCCTTCCCCACTATCCCACCTTTGCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACTATGAGCCTCCTAAGAGAGGGTCCTTTTGGACTTAA 510 0.4569 MGGSSPCASCKLLRRRCTEECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAESLCIQMQQEPTLPTQVDQDDKSLLLSDNNNYEILPHYPTFASSSSSSSNVFQDYEPPKRGSFWT* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02359 169 Coils Coil 85 105 - -
Rops11g02359 169 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Rops11g02359 169 MobiDBLite consensus disorder prediction 146 169 - -
Rops11g02359 169 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Rops11g02359 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02359 Rops-Chr11 39725117 39726279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02359 3 130 AS2 family AT2G30130 84.211 1.17e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g02359 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02359 - - gmx:100780073 287.73