Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02345 ATGGCATCTTCAATCTTATTCGCTCTTCTTCTATTGATTTTCCATTTTCATCATTCCTCTTCATTCTCCCTCTTCGTGGAAAATTTTGAAGAAGACATTATAGTCTCACCCAAAGGCACATTCACTGCAGGCTTTTATCCCGTTGGGGAGAATGCTTATTCCTTTGCCATATGGTTCACCCAACCTCATGAAAATCTCCACAATGCCACCGTTGTTTGGATGGCAAATCGTGACCAACCAGTCAACGGAAAACGCTCAACACTTTCCCTTCTCAAGACAGGTAACCTCGTATTAACAGATGCAGACCAGTTCAATGTTTGGTCCACAAACACTGTCTCATCCAAACCACTTGAGTTGTTTTTGTATGACACCGGCAACCTCGTACTCCGAGAGAAGAACAATAATGGTTTGGTCTTGTGGCAAAGCTTTGATTTCCCAACAGATACGCTCCTTCCTGATCAAAATCTCACCAGGCACATGACCCTTGTTTCCACCACAAGCGACAGCAACTATTCCTCTGGTTTTTACAAGCTTTTCTTCGATAATGACAATGTTCTCCGTCTTCTCTATGATGGCCCTCGAGTTTCAAGCGTTTATTGGCCAGATCCTTGGCTTGTGAGCACTCAAGCTGGGAGATCCATCTACAACAGTAGCAGGGTTGCAGCACTAGATCGTTTGGGGAGCTTCGTTTCTTCTGATAAATTCACTATCAAGACAAGTGATTATGGGACAGTGCTCCAACGAAGATTGACCATTAGTCATGATGGTAATTTTCGTGTTTATAGCAGGAAAGATGAACAAGAGAATTGGTCTGTAACATGGCAAGTCCACCAAGAACCTTGTTTTATTCATGGGATTTGTGGACCCAATAGTATTTGCCATTATGATCCAAGTAGTGGTAGAAAGTGTTTGTGTATTCCAGGCTATGACTGGATCGATAATCAAGATTGGTCTCAAGGGTGCAAGCCAAAATTCCAACCTTCATGTGACAACAAGACCGAGTCTCAGTTTCAATTGATATCCCATGTTGATTTTTATGGATATGACTATGGGTCCTATGACAATTACACCTATGAACAATGTAAGAATCTGTGCTTGGGATTGTGTGAATGCATAGGCTTCCAGCACACCTTTTCGATTGCCAATGGTTACTTTATGTGTTACCCAAAGACGCAGTTGCTAAATGGGCATCTTTCAGCAAGTTTTCTGGGATCATTCTTTGTGCGATTGCCGAAAAGCATTGCTTTGAACTATGAGAACCCCATCGAAGATATTGGCTTGGTTTGTTTGAGAAATGGAGCAATACAACTGGAAAGAGCATATGTCAAAGGCAAAGAAAATGGATCGGTGAAGTTCATGCTTTGGTTTGCAAGTGGCTTAGGAATCACTTCCAAGGTGGACGTTTACAGCTATGGAATTGTTCTTTTGGAAATGATAACTGGAAGGAGCCCAATGATGGGAATCCAAATCAAAGATGGGGGAGAGTCACATAACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAAGAAAGGATCAGGAGTGGCATCTTGGGTGGAACAAATCGTTGACCCTTCTTTGGGTTCAGATTATGACAAGAATAAAATGGAGATTTTGGCAATGGTGGCTTTGGAATGTGTAGGGGAAGAGAAGGACGAGAGACCAAGCATGAGTCAAGTTGCTGAGAGGCTCCAAAGTCATGGACATGATTCTTGA 1716 0.426 MASSILFALLLLIFHFHHSSSFSLFVENFEEDIIVSPKGTFTAGFYPVGENAYSFAIWFTQPHENLHNATVVWMANRDQPVNGKRSTLSLLKTGNLVLTDADQFNVWSTNTVSSKPLELFLYDTGNLVLREKNNNGLVLWQSFDFPTDTLLPDQNLTRHMTLVSTTSDSNYSSGFYKLFFDNDNVLRLLYDGPRVSSVYWPDPWLVSTQAGRSIYNSSRVAALDRLGSFVSSDKFTIKTSDYGTVLQRRLTISHDGNFRVYSRKDEQENWSVTWQVHQEPCFIHGICGPNSICHYDPSSGRKCLCIPGYDWIDNQDWSQGCKPKFQPSCDNKTESQFQLISHVDFYGYDYGSYDNYTYEQCKNLCLGLCECIGFQHTFSIANGYFMCYPKTQLLNGHLSASFLGSFFVRLPKSIALNYENPIEDIGLVCLRNGAIQLERAYVKGKENGSVKFMLWFASGLGITSKVDVYSYGIVLLEMITGRSPMMGIQIKDGGESHNERLVTWVREKRKKGSGVASWVEQIVDPSLGSDYDKNKMEILAMVALECVGEEKDERPSMSQVAERLQSHGHDS* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02345 571 FunFam Putative receptor protein kinase ZmPK1 15 145 - -
Rops11g02345 571 SMART blect_4 25 146 IPR001480 -
Rops11g02345 571 Pfam D-mannose binding lectin 70 160 IPR001480 -
Rops11g02345 571 Pfam S-locus glycoprotein domain 245 309 IPR000858 GO:0048544
Rops11g02345 571 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 164 IPR036426 -
Rops11g02345 571 FunFam Serine/threonine-protein kinase 147 274 - -
Rops11g02345 571 Gene3D Transferase(Phosphotransferase) domain 1 440 570 - -
Rops11g02345 571 ProSiteProfiles Bulb-type lectin domain profile. 19 142 IPR001480 -
Rops11g02345 571 Gene3D - 29 144 IPR036426 -
Rops11g02345 571 PANTHER OS07G0415500 PROTEIN 455 567 - -
Rops11g02345 571 MobiDBLite consensus disorder prediction 550 571 - -
Rops11g02345 571 CDD B_lectin 34 146 IPR001480 -
Rops11g02345 571 SUPERFAMILY Protein kinase-like (PK-like) 459 562 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02345 Rops-Chr11 39468970 39471645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02345 417 571 Receptor kinase-like Gene Family AT2G28250 29.299 4.51e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops11g02345 S_locus_glycop 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02345 - - gmx:100806357 624.78