Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02338 ATGAGAAAATTTGTGCACTTCAAAGAAAAGCCTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGAAAAAACTGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAAAATTCAAGTCAAGGCCCAGGGGAGGGAAGAAGAGAAAATATCCTACTGTTGAAATAATAGTGAGGAAGAGAGTTACCCCGCCAAGTCAATTAGAGAACTGGTTACTTATGCAGGATAGTGAGGAAGATGTGCATTGA 288 0.3958 MRKFVHFKEKPFVCGFDGCGMRFAYKHVRDNHEKTGKHVFTLGDFEEADEKFKSRPRGGKKRKYPTVEIIVRKRVTPPSQLENWLLMQDSEEDVH* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02338 95 Gene3D Classic Zinc Finger 9 38 - -
Rops11g02338 95 ProSitePatterns Zinc finger C2H2 type domain signature. 14 38 IPR013087 -
Rops11g02338 95 SUPERFAMILY beta-beta-alpha zinc fingers 4 35 IPR036236 -
Rops11g02338 95 PANTHER ZINC FINGER PROTEIN 5 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02338 Rops-Chr11 39329484 39329875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02338 3 42 C2H2 Transcription Factor Family AT1G72050 67.500 1.46e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02338 K09191 - gmx:100801812 161.384