Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02310 ATGACCACCTCCTTCTCTGACCTCCATACTTCTCCCACCGACCAAAACCTCGGTGGCTCCGAAAGGCCTCGTGATTTTTCGGATCCAACCGGGTCGGGTGTGCCCAAATACAAGTCCACAACACCTCCATCTCTCCCTCTCTCCCCTTCTTCTTACTTTGCTATCCCTCTGGAATTGAACCTTGCTGAGCTTCTTGATTCCCCGGTTCTCTTCAACTCTTCTAACATTTTGCCATCTCCAACAACTGGATCATTTGCTAGTCAAGGCTTCAATTGGAAGAGCAGTTCTGGGGAAAACCAGAAGAATGTCAAGGAAGAAGAAAAAGGCTTCTTAAGTTTCACTTTCCAAACACAAGAACAACCTCCTGTTTCATCAACTGCTGGGTTTCAATCTTCAATTGACACAGTTCAAACCGGATGGAGTTTTCAGGAAACTGCTAAACAAGATAGTTTTTGTTCAGGAATGAGTATGAGTATGGTGAAATCTGAAAACTCTTATTCAATGCAGAGTTTCACCCCTGAGAATATTGCTAGTTTACAAAATAACCACAATAGTGGTTTACAATCTGATTATAGCAATTTCCACCCACAAGCTCTGATCTTAAGCAGAAGGTCAGATGATGGATATAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCAAGAAGCTATTACAAATGTACATACCCCAAATGTCCAACAAAGAAAAAGGTTGAAAAGTCTTTAGATGGGCAAATTATAGAGATAGTTTACAAAGGTACTCATAACCATCCCCAGCCTACCAGGAGGAACTTATTGTCTGCTTCATCACTTGCAATTCCTCCTTCAAATCATGTCAACACTGAAATACCAGATGCCACTCATGGCAGTGGACAAATAGATTTGGTTGCCACCCCGGATAACTCATCAATATCAATGGGAGATGATGATTTTGAGTATAGTTCCCATAAGAGTAAATCAGGAGTAGAGGAGTTTGATGAAGATGAGCCTAATGCCAAAAAATGGAGAATAGAAGGGGAAAATGAGGGCATATCAGCAACCGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAAACAACCAGTAACATCGATATTCTAGATGATGGGTACAGATGGAGGAAATACGGGCAAAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACAAACCCAGGATGTCCAGTGAGGAAGCAAGTAGAGAGAGCCTCACATGACCTAAAGGCAGTGATCAACACTTATGAGGGAAAGCACAATCATGATGTCCCTGCACCGCGTGGAAGTGGTAGCCTTTCTATTAACAAATCAGTGCCAACCAATACCACAAACAATTCTCTTCAAAATCTTAGACCACTTGCACCAGAAGTGGAAGCACTCTTCACCAACGAGATGCTGCAGAGCTCTGGAAGGTTTGGATTTCCAACAGGGTTTGGGAATTCAATGGAGTCTTACATGAACATGAATCAGCAAGCTGACAATGTGTTCTCTTCCAGAGCTAAGGAGGAGCCTATAGATGACTCGTTTTTTGAATCTTTGCTATGTTAA 1572 0.4224 MTTSFSDLHTSPTDQNLGGSERPRDFSDPTGSGVPKYKSTTPPSLPLSPSSYFAIPLELNLAELLDSPVLFNSSNILPSPTTGSFASQGFNWKSSSGENQKNVKEEEKGFLSFTFQTQEQPPVSSTAGFQSSIDTVQTGWSFQETAKQDSFCSGMSMSMVKSENSYSMQSFTPENIASLQNNHNSGLQSDYSNFHPQALILSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPKCPTKKKVEKSLDGQIIEIVYKGTHNHPQPTRRNLLSASSLAIPPSNHVNTEIPDATHGSGQIDLVATPDNSSISMGDDDFEYSSHKSKSGVEEFDEDEPNAKKWRIEGENEGISATGSRTVREPRVVVQTTSNIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKQVERASHDLKAVINTYEGKHNHDVPAPRGSGSLSINKSVPTNTTNNSLQNLRPLAPEVEALFTNEMLQSSGRFGFPTGFGNSMESYMNMNQQADNVFSSRAKEEPIDDSFFESLLC* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02310 523 Pfam WRKY DNA -binding domain 373 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 MobiDBLite consensus disorder prediction 1 47 - -
Rops11g02310 523 MobiDBLite consensus disorder prediction 1 20 - -
Rops11g02310 523 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 MobiDBLite consensus disorder prediction 33 47 - -
Rops11g02310 523 FunFam WRKY transcription factor 33 359 425 - -
Rops11g02310 523 SUPERFAMILY WRKY DNA-binding domain 364 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 Gene3D WRKY domain 195 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 SMART WRKY_cls 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 Gene3D WRKY domain 359 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 ProSiteProfiles WRKY domain profile. 206 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 FunFam WRKY transcription factor 195 265 - -
Rops11g02310 523 SUPERFAMILY WRKY DNA-binding domain 204 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02310 523 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 452 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02310 Rops-Chr11 38945277 38948067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02310 203 522 WRKY Transcription Factor Family AT2G38470 50.575 2.94e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops11g02310 WRKY 8.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02310 K13424 - gmx:100127385 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02310 11 38945277 38948067 Rops11g02310 11 38945277 38948067 ECH
Rops11g02310 11 38945277 38948067 Rops9g01207 9 20057452 20060546 PCT