LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g02305	ATGAATGTTGAGGGCATGAGACCTCTCAAAGAGATTGAAGTTGAAGGGTTAAATACAAGGAATTTCACTGCCAAAATCTTCAATATTATGGAGACTGAAGAAGCTGACTCAAGAGATAGCTCTCTTATTCTCCTCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAGGTCTGTTGTCAAGGAGAGGTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCTAAATTGACACTCAAGCGCTTAAATGCGGAGGCCAGGTGCATGACCAAGGCAAGGCGACTTGGGGTTTGCACCCCTGTGCTGTATGCTCTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGGTCTTCAGTAAAAGATGTATTTCTTGAATTCGGGTCACGTGGTGTTGATGAAGAACAGCTGGACAAGATTGCATCCCAAATTGGTGATGCAATTGGGAAGTTACATGATGGTGGTCTTGTTCATGGTGATTTAACAACATCGAACATGTTACTGAAGAATGATACCAATCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCGGAAGATAAAGCTGTTGATTTGTATGTCCTGGAAAGAGCCCTTCTTTCAATGCATTCTTCATGTGGGAATGTGATGGATCAGATACTGGCTGCATACCGCAAGTCATCAAAGCAGTGGTCATCCACATGGAACAAGCTGGCACAAGTGCGACAAAGAGGACGAAAGAGGACCATGGTTGGATGA	771	0.4319	MNVEGMRPLKEIEVEGLNTRNFTAKIFNIMETEEADSRDSSLILLKQGAEARVFESSFVGRRSVVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVCTPVLYALDPVLHTLTFEYVEGSSVKDVFLEFGSRGVDEEQLDKIASQIGDAIGKLHDGGLVHGDLTTSNMLLKNDTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDQILAAYRKSSKQWSSTWNKLAQVRQRGRKRTMVG*	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g02305	256	FunFam	TP53-regulating kinase isoform X1	50	122	-	-
	Rops11g02305	256	FunFam	Protein kinase superfamily protein	137	253	-	-
	Rops11g02305	256	Pfam	Protein kinase domain	71	191	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g02305	256	NCBIfam	KEOPS complex kinase/ATPase Bud32	48	250	IPR022495	GO:0004674
	Rops11g02305	256	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	32	256	IPR022495	GO:0004674
	Rops11g02305	256	Gene3D	Transferase(Phosphotransferase) domain 1	137	253	-	-
	Rops11g02305	256	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	163	175	IPR008266	GO:0004672\|GO:0006468
	Rops11g02305	256	Gene3D	Phosphorylase Kinase; domain 1	50	122	-	-
	Rops11g02305	256	ProSiteProfiles	Protein kinase domain profile.	39	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g02305	256	SUPERFAMILY	Protein kinase-like (PK-like)	44	204	IPR011009	-
	Rops11g02305	256	SMART	serkin_6	39	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g02305	36	190	MAP Kinase Kinase Kinase	AT5G66710	27.673	2.17e-07	49.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Rops11g02305		Pkinase	7.7e-13	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g02305	K08851		-	gmx:100782376	404.06