Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02283 ATGTGTGACAAAGACATGTGGAAGCACCGCTTCGTCGTTTCAATCACTTTGCGAATCGAACAGAGTCTCGAAGATAACAGCATAAGCTTTCACTCCATTGGTGTCATGGAGATATCATTGTTAGAAATGCTTGTTAATAGCATATCCTCATTTTTGCATTTATCATTATCTGGAAACATGAACTCAGAATCAGTCTCAAAGTATTACCAGAAGGCAGAAGAGATACTTAAGTTGTTGAAGCCAGTCATCGATGCAATAGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAGCAAGATGTGTAAAGAACTTGGTCATGCAGTTGATGAATTGAAGGAGCATGTTGAGAACTGGCACCCATTGTCTAGCAAAATTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCAGACTTCAGAGTTCAATATTTTCCAGCAGCTGAAGGCTTCTCAGCAATGTCCCATAGATGAATTGAGTTCTGAATGTTTAGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGTCATTAAGGAAGCTATTACAAAACAACTGGAAGGTGTAGGACCCAGTTCAGAGGTCCTGGCAAAAATTGCTGATAGCCTGGGCCTAAGGTCGAATCAGGAGGTTCTGATTGAGGCCGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAAACTGAAAAAACTGCAGAAACTGAATACATTGAGCAATTGATTGCTGTTGTAACACGTATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTTGCAGCCCAGTGCCAGTACCTGCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTGATGACTGATCCGGTGATTGTGGCCTCAGGGCAAACCTATGAACGGGCTTTTATCAAGAACTGGATTGATCTCGGGCTTACTGTTTGTCCAAAGACACATCAGACACTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGTTGATCCCACAAAGTCCACAAATTTAAATCAAGCACCTGTCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTGTTTTTCCTCATTCCAGGAGCAACCAGCCATCCTCACCCGAGTCGGCTCGATCTCGTTCTTTTAGTTCTCCAGGTAATAACTTAACTTCTGGTGGAATCCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACATCAGAAGGTTCCTTAAGTGGCATTGTTAATGGGCAATATATGGATCTTGCAAGAATATCACCCACAGGTTTAGATGACAGGTCTGGTAGCTCAGATGAAAGCAGTATGGATTCAGTTGGCCAACCATCAATGTCACCATCTAGAGGGGAATCTTCCAGTGCCTTTATCTCTGAACAATCTCAAACCCATGTTAGAGCTGTATCCGATTCCAGTGCATTTTCTGGTGCAAATTTTCCTCAAGAAACACAAGGTAATGACAACAATGCTACTCAGCTGTCCACTAGTCCAGGCTACAGTAGAGATGCTTCTGGGGAGTTAAATCCAGGGCCAGATGCTGCTGGTGCTGCTGTCATGCCATCAATGCATAGAGAACCTGAGTTCCCACCCCGATTGGTGGAGACAAGATCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAGAGGCTTGTTCCTAGGATAGTATCTTCTTCTGCTATTGAAACAAGAGCTGATATTTCTGGAATTGAAACCCAGGTCCGGAATTTAGTTGAGGGCTTGAGGAGCTCCGATCTCGATACTCAGAGAGAGGCAACAGCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAGCTTATTAGTTGACTTACTGCAGTCAACCGATATAAAGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGATAACAACAAAACTGCAATCGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTGCTCGAGACTGGGAGCCCAGAAGCCAAGGAGAACTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTAACATAGGGAGGTCTGGAGCAATTAGACCACTGGTAGATTTATTAGGGAATGGAACCCCTAGGGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATATCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGATTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCAAGAAGGAAGAAACGCGATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAGGTTGTTGAGTTGGGTTCTGCCAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAAACAGTAACAAATTCTTGAGCATGGTGCTCCAACAAGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAAGCCCAGGCTCTACTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2625 0.4389 MCDKDMWKHRFVVSITLRIEQSLEDNSISFHSIGVMEISLLEMLVNSISSFLHLSLSGNMNSESVSKYYQKAEEILKLLKPVIDAIVNSELASDEVLSKMCKELGHAVDELKEHVENWHPLSSKIYFVMQVEPLISRIQTSEFNIFQQLKASQQCPIDELSSECLEHCVQKLKLLGHEETSSVIKEAITKQLEGVGPSSEVLAKIADSLGLRSNQEVLIEAVALEKLKENAEQTEKTAETEYIEQLIAVVTRMHERLVMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTNLNQAPVLHGYMESGTTRESPVFPHSRSNQPSSPESARSRSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLSGIVNGQYMDLARISPTGLDDRSGSSDESSMDSVGQPSMSPSRGESSSAFISEQSQTHVRAVSDSSAFSGANFPQETQGNDNNATQLSTSPGYSRDASGELNPGPDAAGAAVMPSMHREPEFPPRLVETRSRSQAIWRRPSERLVPRIVSSSAIETRADISGIETQVRNLVEGLRSSDLDTQREATAELRLLAKHNMDNRIAIANCGAISLLVDLLQSTDIKIQENAVTALLNLSINDNNKTAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKINIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKNRIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIQEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNSNKFLSMVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02283 874 Coils Coil 214 244 - -
Rops11g02283 874 MobiDBLite consensus disorder prediction 366 426 - -
Rops11g02283 874 CDD RING-Ubox_PUB 272 324 IPR045210 -
Rops11g02283 874 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 713 755 IPR000225 GO:0005515
Rops11g02283 874 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Rops11g02283 874 MobiDBLite consensus disorder prediction 443 520 - -
Rops11g02283 874 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Rops11g02283 874 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 754 795 IPR000225 GO:0005515
Rops11g02283 874 SUPERFAMILY ARM repeat 591 863 IPR016024 -
Rops11g02283 874 Gene3D - 571 869 IPR011989 -
Rops11g02283 874 FunFam RING-type E3 ubiquitin transferase 574 869 - -
Rops11g02283 874 MobiDBLite consensus disorder prediction 371 426 - -
Rops11g02283 874 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Rops11g02283 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Rops11g02283 874 MobiDBLite consensus disorder prediction 438 551 - -
Rops11g02283 874 Pfam Armadillo/beta-catenin-like repeat 704 741 IPR000225 GO:0005515
Rops11g02283 874 Pfam Armadillo/beta-catenin-like repeat 661 700 IPR000225 GO:0005515
Rops11g02283 874 Pfam Armadillo/beta-catenin-like repeat 622 659 IPR000225 GO:0005515
Rops11g02283 874 PANTHER U BOX DOMAIN-CONTAINING 64 863 - -
Rops11g02283 874 SUPERFAMILY RING/U-box 263 348 - -
Rops11g02283 874 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Rops11g02283 874 FunFam RING-type E3 ubiquitin transferase 270 345 - -
Rops11g02283 874 SMART arm_5 620 660 IPR000225 GO:0005515
Rops11g02283 874 SMART arm_5 661 701 IPR000225 GO:0005515
Rops11g02283 874 SMART arm_5 825 865 IPR000225 GO:0005515
Rops11g02283 874 SMART arm_5 702 742 IPR000225 GO:0005515
Rops11g02283 874 SMART arm_5 783 823 IPR000225 GO:0005515
Rops11g02283 874 SMART arm_5 743 782 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02283 Rops-Chr11 38306092 38314222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02283 231 874 U-box Gene Family AT2G23140 64.142 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02283 - - tpra:123913325 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02283 11 38306092 38314222 Rops9g01159 9 19075035 19086902 PCT