Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02271 ATGCGAACAAGGTCTTCCATCTTTTCTCTGCAACACCTTCTTACCCTCTCACACTCCCTTCGTAACCGCTTTTACCACAACACAACAAACAGAACCCAAATCTTGAATTCCATTAGAAACCTCAAAAACATCGAAACAGCCATCACCTTCTTTCACCAAATGCTAACCATGAAACCATTCCCATGTGTAAAAGACTTCAACTTCTTATTCACCTTCATAGTCAAAACCAAACACTACACAACCACAATCTCCCTAATCAAACACGCACACTCCCTAGGTCTCACACCCGACACCTACACCCTCAACATCCTCATCAATTGTCTCTGCCATTTGGGCCACACCCCTTTTGGGCTCTCCGTTTTGGGCCTCATGTTCAAATTCGGGCTCGAGCCCACTTTGGTGACCCTCAACACCATCGTTAACGGCCTTTGCTTCGAAGGCCACGTGGCACAAGCATTGAGGTTAGTTCACCACATGGAACATGTGGGTTATAAACCCAACAGTTACACGTTTGGAGCGTTGGTTAACGGTTTTTGCAAGATTGGTGACACGACAGGTGGTTTGGTTTGTCTTAGGAACATGGAAGAGAGAAACTGTGAACTAAACGTTGTCGTTTATAATGCTATTATCGATGGTCTTTGTAAAATTGGGTTGGTAAATGAGGCTTTGGATTTGTTCTATGAAATGAGTAGTAAGGGTATTCACCCTAGTGTTGTTACTTACAATTGCTTAATTCAAGGGCTTTGTGAGTTTGGTGATTGGACAGGTTCTGCTTTTTTGTTGAATGAGATGATGCAAAAGGGAGTAATGCCTGATGTGCAAACGTTTACGATTTTGGTTGATGGTTTTTGCAAAGAGGGGTTGGTTTTGGAGGCTAGGAGTGTGATTAGTTTCATGGTTCATATGGCGGAGGAGCCTAATGTTGTTACTTTTAATTCTTTGATTGGTGGGTATTGTTTGAGGAATCAAATGGGTGAGGCTATGAAGGTGGTTGATTTGATGGTCAGAAGGAATTGTTTGCCAAGTGTTGTGACTTATAATTCATTGATTCATGGGTGGTGTAAGGTTAAGGATGTTGATAAGGGTATATGTCTCTTGGGTGAAATGGTTAATAAAGGGTTGCATCCTAATGTTGTGTCTTGGACTACCCTTGTTGGTGGGTTTTGTCATGTTGGTAAACCATTGGCTGCAAAAGAATTGTTTTTTACAATGAAGGAATATGGGCAGGTTCCTAATCTTCTGACATGTGCTGTTATATTGGATGGCTTGTTCAAATGTGGTTTTTGTTCTGAGGCAATGTCATTGTTTAGTGCAATGGAGGAGAGTGATCTAGATCTTGATATTGTGGTTTACAATGTTATGCTTGATGGAATGTGCAAAGCTGGGAAACTGAATGATGCAAGGGGACTTCTTGCTTGTTTGCCTAAAGGGTTGAAATTTGATGCATATACTTATAACATAATGATTGGAGGTCTGTGTAGAGAAGGGCTGCTGGATGAAGCTGAAGACTTACTTATGAAAATGGAAGAGAATGGCTGCCCACCTAATAGATGCTCTTATAATGTCTTTGTCCAGGGATTGTTGCGTAAACATGATATTTCAAGGTCAAGAAAATACCTTCAAATAATGAAAGGCAAAGGATTTCCAGTAGATGCTACTACCACAGTGTTGCTTATGGGCTTCTACTCTGCTAATAAAGGAGAGAGTTCTTCTAAATCAAACCTCCATGAATATGTTTCATCTGAGTCTGAGTGTGATAAGTTTACTATTCCTGACCTACTTAATGGGCTAGCCTCTGAAGGCAGTTGTAGAGTCAGCTCTTCCACAAATGACATTATCATTGACATGAAAAATGAATCCTTCACTGGAAATTCTGAAAATCTTGATGGGTTTGATACAATTTCACAGTTAGGTCTTGCTACAATATTAACAAAGCCAGTGAGGTTTGATGATAAGGTCATTGAAGCCACTGAGTTTAGAAGATCAGCCAAACTCGATGAGCTAAAGGCTCATAAGTCTCTATCTGTCAAAATTAGCAAAGAGGAAAGTAGTAGAACCAAGAGAGAGAGAAAAACTAGTCCAGTATCTAGAATCTCCTCTGCTAATTCTACAGGCATAAGGCTTAGAGTCAATTCTCCAAAACTTGCAAGTAGGAAAGTTCAAGCCTATGCAAGAAGGAGTCTATCATCCAGTGCAAGATGTCAATTAGATGTCCTTCTTTGA 2223 0.4049 MRTRSSIFSLQHLLTLSHSLRNRFYHNTTNRTQILNSIRNLKNIETAITFFHQMLTMKPFPCVKDFNFLFTFIVKTKHYTTTISLIKHAHSLGLTPDTYTLNILINCLCHLGHTPFGLSVLGLMFKFGLEPTLVTLNTIVNGLCFEGHVAQALRLVHHMEHVGYKPNSYTFGALVNGFCKIGDTTGGLVCLRNMEERNCELNVVVYNAIIDGLCKIGLVNEALDLFYEMSSKGIHPSVVTYNCLIQGLCEFGDWTGSAFLLNEMMQKGVMPDVQTFTILVDGFCKEGLVLEARSVISFMVHMAEEPNVVTFNSLIGGYCLRNQMGEAMKVVDLMVRRNCLPSVVTYNSLIHGWCKVKDVDKGICLLGEMVNKGLHPNVVSWTTLVGGFCHVGKPLAAKELFFTMKEYGQVPNLLTCAVILDGLFKCGFCSEAMSLFSAMEESDLDLDIVVYNVMLDGMCKAGKLNDARGLLACLPKGLKFDAYTYNIMIGGLCREGLLDEAEDLLMKMEENGCPPNRCSYNVFVQGLLRKHDISRSRKYLQIMKGKGFPVDATTTVLLMGFYSANKGESSSKSNLHEYVSSESECDKFTIPDLLNGLASEGSCRVSSSTNDIIIDMKNESFTGNSENLDGFDTISQLGLATILTKPVRFDDKVIEATEFRRSAKLDELKAHKSLSVKISKEESSRTKRERKTSPVSRISSANSTGIRLRVNSPKLASRKVQAYARRSLSSSARCQLDVLL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 477 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Rops11g02271 740 MobiDBLite consensus disorder prediction 676 694 - -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 99 132 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 134 167 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 344 378 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 169 203 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 239 273 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 449 471 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 275 307 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 204 237 IPR002885 -
Rops11g02271 740 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Rops11g02271 740 Pfam PPR repeat 267 299 IPR002885 -
Rops11g02271 740 Pfam PPR repeat 444 471 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 321 423 IPR011990 GO:0005515
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 9 151 IPR011990 GO:0005515
Rops11g02271 740 Pfam PPR repeat 99 129 IPR002885 -
Rops11g02271 740 MobiDBLite consensus disorder prediction 676 703 - -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Rops11g02271 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 475 629 IPR011990 GO:0005515
Rops11g02271 740 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 174 342 - -
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 424 474 IPR011990 GO:0005515
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 231 305 IPR011990 GO:0005515
Rops11g02271 740 Gene3D Tetratricopeptide repeat domain 157 230 IPR011990 GO:0005515
Rops11g02271 740 Pfam PPR repeat family 202 249 IPR002885 -
Rops11g02271 740 Pfam PPR repeat family 481 528 IPR002885 -
Rops11g02271 740 Pfam PPR repeat family 376 425 IPR002885 -
Rops11g02271 740 Pfam PPR repeat family 306 355 IPR002885 -
Rops11g02271 740 Pfam PPR repeat family 131 180 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02271 Rops-Chr11 38216168 38219811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02271 184 698 Glycosyltransferase AT1G05670 26.744 1.33e-53 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02271 - - ahf:112749361 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02271 11 38216168 38219811 Rops11g02271 11 38216168 38219811 ECH
Rops11g02271 11 38216168 38219811 Rops9g01147 9 18916407 18917689 PCT