Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02260 ATGAATTTTCAAGGTGCCACTGCTGACTATGGCGGTTGGCAGAGTGCTCATGCCACTTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTGAGTTTAGCCTTTCATTTCTTTATTTTTCACATTGGAAGTGCAGGCACTTCTAGGTGCCTTGTGTCAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGATCACTAATGTGGCTGGTGCTGGGGATGTCCATTCAGTGTCCATCAAAGGGTCAAGAACTGGGTGGCAACCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCTTACCTCAATGGACAAAGCCTCTCATTTCAAGTCACCACCAGTGATGGTAGAACTGTGACAAGCTACAATGCGGCACCTGCCAATTGGCAATTTGGGCAGACCTTCCAAGGTGGTCAATTCTAG 450 0.48 MNFQGATADYGGWQSAHATFYGGGDASGTMGEFSLSFLYFSHWKCRHF*VPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNAAPANWQFGQTFQGGQF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02260 148 FunFam Expansin 56 148 - -
Rops11g02260 148 Gene3D - 55 148 IPR036749 -
Rops11g02260 148 PANTHER EXPANSIN-A15 7 31 IPR002963 GO:0009664
Rops11g02260 148 PRINTS Expansin signature 67 88 IPR002963 GO:0009664
Rops11g02260 148 PRINTS Expansin signature 55 67 IPR002963 GO:0009664
Rops11g02260 148 PRINTS Expansin signature 131 147 IPR002963 GO:0009664
Rops11g02260 148 PRINTS Expansin signature 102 123 IPR002963 GO:0009664
Rops11g02260 148 Pfam Expansin C-terminal domain 57 134 IPR007117 -
Rops11g02260 148 SUPERFAMILY PHL pollen allergen 53 145 IPR036749 -
Rops11g02260 148 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 66 145 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02260 Rops-Chr11 37940613 37942575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02260 49 148 Expansin Gene Family AT1G26770 84.000 2.70e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02260 - K20628 ncol:116262492 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02260 11 37940613 37942575 Rops11g02260 11 37940613 37942575 ECH
Rops11g02260 11 37940613 37942575 Rops6g01077 6 25251181 25254295 ECH