Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02258 ATGAGAAAGAAGGTTAAGCTTGCTTTCATTATCAATGATTCTGCTAGGAAGATATCCTACAGAAAAAGGAAAACAAGTCTTATGAAGAAGATTGATGAACTCACCACCCTTTGCGGTATTGAGGCATGTGCTATAATTTATAATGAATTTGATCCTCATCCTGAGGTTTGGCCATCCCCATTGGAGGTCGAAAAGATGATCACCAAGTTCAGGAATTATTCTAAATTTGATCAGGGGAAGAAGAAACTGGACCAAGAAAGCTTTTTGAAGCAGAGGGTCCTGAAGGCCAAAGAGCAATTAATGAAAATGAAGAAAAACAATAGGGAGATGGAGATTTCTGTCCTAATGGATCAATTTCTTGTTGGAGGAAATATTATGGACAATCAAAACATGGTTGATTTGAATGACCTGACATGGTTCATTGACAAGAAGCTGAAGGAAATTAGTTGGCATATGGTTGAACAGGACAAAAAGGCTTCAGCAACTCAGAGCCAAGAACAAGTGGTGGAATCAATGGTGGCAGATGGAGCAACCAAGCAAGGAAATTAA 549 0.388 MRKKVKLAFIINDSARKISYRKRKTSLMKKIDELTTLCGIEACAIIYNEFDPHPEVWPSPLEVEKMITKFRNYSKFDQGKKKLDQESFLKQRVLKAKEQLMKMKKNNREMEISVLMDQFLVGGNIMDNQNMVDLNDLTWFIDKKLKEISWHMVEQDKKASATQSQEQVVESMVADGATKQGN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02258 182 Coils Coil 93 113 - -
Rops11g02258 182 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops11g02258 182 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02258 182 Gene3D - 12 96 IPR036879 GO:0003677|GO:0046983
Rops11g02258 182 FunFam Agamous-like MADS-box protein AGL80 12 97 - -
Rops11g02258 182 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops11g02258 182 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops11g02258 182 PANTHER MADS BOX PROTEIN 2 149 - -
Rops11g02258 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
Rops11g02258 182 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Rops11g02258 182 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02258 Rops-Chr11 37898991 37899539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02258 2 148 Type I MADS-box Gene Family AT5G48670 53.061 2.80e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02258 SRF-TF 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02258 - - gmx:100813231 202.216