Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02257 ATGGGAAAGAAGGTGAAGCTTGCTTTCATGGTCAATGATTCTGAAAGGAAGATATCATTTAGGAAAAGAAAAAAGAGTCTGATAAAGAAGATGGATGAACTCACCACCCTGTGCGGGATTGAGGCTTGTGCAATAGTTTATAGTGAATTCGATCCTCACCCAGAGGTTTGGCCATCCACATTAGAGGTCGACAATATGATCACCAAATTCAGGAGTTATTCTGAATTTGATCTGGGCAAGAATAAAAAGTTGGACCATGAGAGCCATTTGCAGCAGAGGGTTCAAAAGGCCAAAGAGCAGCTAGTGAAAATGAAAAAGAATAATAGGGAGATAGAGATTTCCTTCCTCATGTATCAGTTTCTTGCAGGAGTAAATATTTTGGATAATCTCAACATTGTTGATTTGAAGGATCTTACATGGCTCATTGGCAGAAAGCTGAAGGAGATTAGTTGGAGGATGGTGGAACTAGACAAAAAGGCTTCAACATCTCAAAGCCAAGGTCAAATGGTGGCAGATGGGGCAACCAACCAAGGAAATGAGGGACAAGTGGATCATGACCCAGGGTTTGAGATGAACCTGGATGATACACTAGAATTGCAATCCATTTTGAACTCATTTAATAATTTAGATAATGCAATGCTACCATTTCAATTACCTTAA 660 0.397 MGKKVKLAFMVNDSERKISFRKRKKSLIKKMDELTTLCGIEACAIVYSEFDPHPEVWPSTLEVDNMITKFRSYSEFDLGKNKKLDHESHLQQRVQKAKEQLVKMKKNNREIEISFLMYQFLAGVNILDNLNIVDLKDLTWLIGRKLKEISWRMVELDKKASTSQSQGQMVADGATNQGNEGQVDHDPGFEMNLDDTLELQSILNSFNNLDNAMLPFQLP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02257 219 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Rops11g02257 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02257 219 PANTHER MADS BOX PROTEIN 3 129 - -
Rops11g02257 219 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Rops11g02257 219 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops11g02257 219 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops11g02257 219 FunFam Agamous-like MADS-box protein AGL80 12 98 - -
Rops11g02257 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Rops11g02257 219 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02257 219 Coils Coil 87 114 - -
Rops11g02257 219 Gene3D - 12 110 IPR036879 GO:0003677|GO:0046983
Rops11g02257 219 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02257 Rops-Chr11 37873476 37874135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02257 3 179 Type I MADS-box Gene Family AT5G48670 46.328 3.74e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02257 SRF-TF 5.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02257 - - lja:Lj1g3v2809220.1 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02257 11 37873476 37874135 Rops11g02257 11 37873476 37874135 ECH