Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02256 ATGAGAAAGAAGGTGAAGCTTGCTTTCATTATCAACAATTCTGCTAGGAAGATATCTTACAGAAAAAGGAAAAAGAGTCTTATGAAGAAGATTGATGAACTCACCACCCTTTGTGGTATTGAGTCATGTGCTATAATTTACAGTGAATTTGATCCTCATCCTGAGGTTTGGCCATCCCAATCAGAGGTCGAAAAGATGATCACCAAGTTCAGGAATTATTCTGAATTTGATCAAGGCAAGAAGAAGCTGGACCAGGAGAGCTTTTTAAAGCAGAAGGTTCTGAAGGCCAAAGAGCAATTAGTGAAAATGAAAAAGAACAATAGAGAGATGGAGATTTCCTTCCTAATGGATCAATTTCTCGCTGGAGGAAATATTATGGACAATCATAACATGGTTGATTTGAATGACCTAACATGGCTCATTGACAAGAAGCTGAAGGAAATTAGTTGGAATATGGTTGAACTGGACAAAAAAGTTTCATCAACTCAGAACCAAGCACAAGTGGTGGAATCAATGGTGGAAAATGGAGCAACCAGACAAGGAAATTAG 549 0.3807 MRKKVKLAFIINNSARKISYRKRKKSLMKKIDELTTLCGIESCAIIYSEFDPHPEVWPSQSEVEKMITKFRNYSEFDQGKKKLDQESFLKQKVLKAKEQLVKMKKNNREMEISFLMDQFLAGGNIMDNHNMVDLNDLTWLIDKKLKEISWNMVELDKKVSSTQNQAQVVESMVENGATRQGN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02256 182 Coils Coil 93 113 - -
Rops11g02256 182 Gene3D - 12 95 IPR036879 GO:0003677|GO:0046983
Rops11g02256 182 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02256 182 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops11g02256 182 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02256 182 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops11g02256 182 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops11g02256 182 FunFam Agamous-like MADS-box protein AGL80 12 97 - -
Rops11g02256 182 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Rops11g02256 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
Rops11g02256 182 PANTHER MADS BOX PROTEIN 2 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02256 Rops-Chr11 37845142 37845690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02256 2 148 Type I MADS-box Gene Family AT5G48670 53.741 1.71e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02256 SRF-TF 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02256 - - lja:Lj1g3v2809220.1 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02256 11 37845142 37845690 Rops11g02256 11 37845142 37845690 ECH