Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02251 ATGGGAAAGAAGGTGAAGCTTGCTTTCATGATCAGTGATTCTAAGAGGAAGATATCATTCAGGAAAAGAAAAAATAGTCTGTTGAAGAAGATTGATGAACTCACCACCCTCTGTGGGATCGAGGCTTGTGCTATAGTTTATAGCGAATTCGATTCTCGACCTGAGGTTTGGCCATCCCCATTAGAGGTTGAAAAAATGATCACCAAGTTCAGGAATTATTCTGAATTTGATCCTGGCAAGAATAAGAAGAAGTTGGACCATGAGAGCTATCTAAAACAGAAGGTTCTCAAGGCCGAAGAGCAATTAGTGAAGTTGAAGAAGAACAATAGGGACAATGAGATTTCCTTGCTAATGTTTCAATATCTTGCAGGAGTAAATATTTTTGACAATCTTAACATGATTGATTTGAATGATCTAACATGTCTCATTGACAAGAAGCTAAAGGATATTAGTTGGAAGATGCTTGAACTGGACAAGAAGGCTTTAGCATCTCAAAGAAAAACTCAAATGGTGGCATCAATGATGACAGATGGAGCAACCAGCCATAGAAACGAGGGACATGTGGATCATGACCTTGGGTTTCAGATAAACCTGGATGATACACAAGAGTTGCAATCGATTCTGAATTCGTTCAATGATTTAGATAATGCAATGTTGCCAATTTAA 666 0.3814 MGKKVKLAFMISDSKRKISFRKRKNSLLKKIDELTTLCGIEACAIVYSEFDSRPEVWPSPLEVEKMITKFRNYSEFDPGKNKKKLDHESYLKQKVLKAEEQLVKLKKNNRDNEISLLMFQYLAGVNIFDNLNMIDLNDLTCLIDKKLKDISWKMLELDKKALASQRKTQMVASMMTDGATSHRNEGHVDHDLGFQINLDDTQELQSILNSFNDLDNAMLPI* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02251 221 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Rops11g02251 221 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Rops11g02251 221 PANTHER MADS BOX PROTEIN 4 132 - -
Rops11g02251 221 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02251 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02251 221 FunFam Agamous-like MADS-box protein AGL80 12 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02251 Rops-Chr11 37747386 37748051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02251 3 178 Type I MADS-box Gene Family AT5G48670 43.182 4.51e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02251 SRF-TF 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02251 - - gmx:100813231 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02251 11 37747386 37748051 Rops11g02251 11 37747386 37748051 ECH