Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02250 ATGACTAGAAAGAAGGTGGAGCTTGCATACATAACCAGCGACTCTAAGAGGAAGGCAGCACTGAGGAAAAGGAAGAATGGTTTGATCAAAAAGATTGATGAAATTAGCACCCTTTGTGGGATTGAATCATGTGCTATAATCTATAGCCCAAATGATCCGCAGCCACAAGTTTGGCCATCTCCTTCGGGAGTTCAAAGGGTGCTGTCCAAGTTCATGAAAATGCCTGAGCTAGAACAAAGCAAAAAGATGTTGAATCAGGAGAGCTTCTTGGAGCAAAGGATACTGAAAGCCCAAGAGCAGCTAAAGAAACAAAGGAATGAAAACAGGGTGAAAGAAATGACCCATCTTATGTTTCAATACCTGAATGCTGGCCAGATTTTTGGCAATCTTAGCATGGTTGATCTCAATGATCTCTCATGGGTGATTGATCAAAACCTGAAGGAAATCGACAAGAAGATCAATCAGATCGAAGCTCCAGAGGCTGTTGAAAATGGAGCAGAAATTCAGAGTGGAGGAGAGCAAGCATCCATGGAACATGATCAAATGATGGAGACCAAAGTGGATGCCATGCAAAATCAACATTTGTCAATGGAGTTCATCAACTATGGTGTCCCACAATTTGGAGATGTCAATGTCCCAAATGTCCTCTGGCCAAATCCACAATTCCCTTGA 672 0.4241 MTRKKVELAYITSDSKRKAALRKRKNGLIKKIDEISTLCGIESCAIIYSPNDPQPQVWPSPSGVQRVLSKFMKMPELEQSKKMLNQESFLEQRILKAQEQLKKQRNENRVKEMTHLMFQYLNAGQIFGNLSMVDLNDLSWVIDQNLKEIDKKINQIEAPEAVENGAEIQSGGEQASMEHDQMMETKVDAMQNQHLSMEFINYGVPQFGDVNVPNVLWPNPQFP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02250 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g02250 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g02250 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02250 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops11g02250 223 Coils Coil 87 114 - -
Rops11g02250 223 PANTHER MADS BOX PROTEIN 3 154 - -
Rops11g02250 223 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02250 Rops-Chr11 37699139 37699955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02250 1 177 Type I MADS-box Gene Family AT5G48670 53.672 1.86e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02250 SRF-TF 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02250 - - gmx:100813231 270.396