Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02247 ATGACAAGAAGAAAGGTGAAACTTGCATTCATAGTCAATGACTCTGCAAGGAAGACAACATTCAGGAAGAGAAAGAAGGGTCTGTTGAAGAAGGTGGATGAACTAAGCACCCTTTGTGGCATTGAAGCTTGTGCTATAATTTATAGCCCTTACGATCCTCAACCAGAGGTTTGGCCATCCCCATGGGGTGTCCAAAGGGTGCTTGCCAAGTTCAAGACAATGCCTAAATTGGAGCAAAGCAAGAAGATGATCAACCAAGAGACTTTCTTGAAACAAAGTATTCATAAGGCGAAAGAGCTGGTGAAGAAGCAAAGGAGGGACAATAGGGACAAGGAGATGACCCTTCTCATGTTCCAGTCTCTTAGTGCAGGGAAGGTTCTTCATGATAACTTGACCGTGAATGATTTGAATGATCTTGAGTGGTTGATTGAACAGAACTTGAAGCACGTTAATCGAAGCTTGGAAAAACTGAATAAAGATCCTCAGATGGTGACTCCAAGCCAACCTCAAATTGTAGCACCACCACCAATGGCAGTGGCAAATGAAGAAATGACACTCGGGGTTCATGGCCATGGATATGATATGCATGCTGACAACATGCAAAATATGTGGTTCATGGATATGATCAATGGCAATGGGGATGAGACAATGCCATTTGGAGATACCAATCATCACAATGGCTTTTGGTCAAACCTACCTTGA 702 0.4302 MTRRKVKLAFIVNDSARKTTFRKRKKGLLKKVDELSTLCGIEACAIIYSPYDPQPEVWPSPWGVQRVLAKFKTMPKLEQSKKMINQETFLKQSIHKAKELVKKQRRDNRDKEMTLLMFQSLSAGKVLHDNLTVNDLNDLEWLIEQNLKHVNRSLEKLNKDPQMVTPSQPQIVAPPPMAVANEEMTLGVHGHGYDMHADNMQNMWFMDMINGNGDETMPFGDTNHHNGFWSNLP* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02247 233 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02247 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Rops11g02247 233 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 PANTHER MADS BOX PROTEIN 3 157 - -
Rops11g02247 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Rops11g02247 233 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g02247 233 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02247 Rops-Chr11 37664084 37664785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02247 1 192 Type I MADS-box Gene Family AT5G48670 54.545 4.65e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02247 SRF-TF 8.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02247 - - gmx:100813231 297.36