Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02246 ATGACTAGAAAGAAGGTGGAGCTTACATACATTAGCAGTGACTCGAAGAGGAAGGCAGCGCTCAAGAAAAGGAAAAATGGTTTGATCAAGAAGATTGATGAAATCAGCACCCTTTGTGGGATCGAGGCATGTGCTATAATCTATAGTCCAAATAATCCTCAGCCAGAGGTTTGGCCATCTCCATCAAGAGTTGAAAGGGTGCTATCCAGGTTTAGGAGAATGCCTGAATTGGAACAAAACAGAAGGATGTTGAATCAAGAGAGCTTCTTACAGCAAAGGATCCTGAAAGCCCAAGAGCAGCTGAACAAACAAAGGAATGACAACAGGAAGAAAGAGATGACTAATCTCATGTTTCAATACCTTAATGCTGGCCAAATTTCTAGCAATGTTAACATGATGGATCTTAATGATCTGTCCTGGTTGATTGATCAGAACTTGAAGGAAATCAATTGGAAGATCAATCAGATCCAAGCCACAGAGGCGATTGAAAATGGACCAGAAGTGAGTGGAGGAAAGCAAGCACATATGAGTCATGACCAAATGCTGGAGGCCATGCAAAAGCAACAATTGTCTATGGATTTCAATAATGGTGGTGTGCTATCCTTTGGAAATGTTAATGTCCAAAATGACCTCCGGTCAAATCCATAA 648 0.412 MTRKKVELTYISSDSKRKAALKKRKNGLIKKIDEISTLCGIEACAIIYSPNNPQPEVWPSPSRVERVLSRFRRMPELEQNRRMLNQESFLQQRILKAQEQLNKQRNDNRKKEMTNLMFQYLNAGQISSNVNMMDLNDLSWLIDQNLKEINWKINQIQATEAIENGPEVSGGKQAHMSHDQMLEAMQKQQLSMDFNNGGVLSFGNVNVQNDLRSNP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02246 215 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g02246 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 PANTHER MADS BOX PROTEIN 3 150 - -
Rops11g02246 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g02246 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02246 215 Coils Coil 87 114 - -
Rops11g02246 215 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Rops11g02246 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02246 Rops-Chr11 37637914 37638653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02246 1 153 Type I MADS-box Gene Family AT5G48670 58.170 1.09e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02246 SRF-TF 2.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02246 - - gmx:100813231 249.595