Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02245 ATGACAAGAAGAAAGGTGAAACTTGCATACATAGTGAATGACTCTGCAAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTGTTGAAGAAAGTGGATGAACTAAGCACCCTTTGTGGCATTGAAGCCTGTGCTATAGTTTATAGCCCCTATGATCCTCAACCAGAGGTTTGGCCATCCGCAAGGGGTGTCCAAAAGGTGCTTTCCAAGTTCAAGACAATGCCTGAATTGGAGCAGAGCAAGAAGATGATGAACCAGGAGATTTTCTTGAAACAAAGGATTCATAAGACAAAAGAGCAGGTGAAGAAGCAGAGGAGGGACAACAGGGAGAAGGAGATGACCCTTCTCATGTTTCAGTTCCTTAGTGCAGGGACAATTTTTTATAACAACATGACCACAAATGATATGGATGATCTTCTGTGGTTGATTGACCAGAACATGAAGGATGTTAATCGAAGGTTGGAAACACTGCATAAAGATGCTCCTCAGATCATGACTCCAAGCCAACCCCAAATGGTAGCACCACCACCAATGGCAGTGGCAAACACTGAAGAAACGACACCGGGGGTTCATGGCCATAGATTGGATATGCATGCTGACACCACACAACAGATGTTGTTCATGGATATGATCAATGGTAATTGGGATGGGACAATGCCATTTGGAGATGCCAATCTCCAAAATGTGTTTTGGCCAAACCTATTACCTTAA 711 0.4374 MTRRKVKLAYIVNDSARKATFKKRKKGLLKKVDELSTLCGIEACAIVYSPYDPQPEVWPSARGVQKVLSKFKTMPELEQSKKMMNQEIFLKQRIHKTKEQVKKQRRDNREKEMTLLMFQFLSAGTIFYNNMTTNDMDDLLWLIDQNMKDVNRRLETLHKDAPQIMTPSQPQMVAPPPMAVANTEETTPGVHGHRLDMHADTTQQMLFMDMINGNWDGTMPFGDANLQNVFWPNLLP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02245 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02245 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g02245 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g02245 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops11g02245 236 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Rops11g02245 236 Coils Coil 94 114 - -
Rops11g02245 236 PANTHER MADS BOX PROTEIN 3 132 - -
Rops11g02245 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02245 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g02245 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g02245 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02245 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02245 Rops-Chr11 37628888 37629598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02245 1 187 Type I MADS-box Gene Family AT5G48670 57.513 2.49e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02245 SRF-TF 7.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02245 - - gmx:100813231 260.381