Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02244 ATGGACAAGGACATTTCCCGGTGGGTACTTGAATTTCTCCTTCGGAGTTCCGTACCCGATTCTCTGATTCAGAAAACCCTCACCGCACTTCCACTCTCCGGCGCCGATAACCGCCTCAAGAAAACCCTTCTCCTCCGCACCCTCCAATCCCAACTCCTCAAAGCCTCTCTCTCCGAAACCGCACTCCAAATCCTCGAACTCCTCGAAGAAATCGATCGAAACGACGCCGTTCCAATCTCCGATTCCATGCGCCGCGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTCAAGTACCTCGCCGCCTCCCCCGACGACCCTTCCGGCGAGTATTTCTCCGCCGTGGGTCGGATCTGGCGCGGCCGGGTTGTCCAGATGGCTGCGGCGGAGGGAGGTCTCCGGAGTGAGCTGATCTCCGGCGAATTGAAACGGTGGAGGGATGACGTGGAGGCGGCGCTTTGGGACCCTAAGGTTTCTGAGAGGCTTGCGAATTTGAATACGAGAAGGGATGCGTTGAATGAGGTGAAGGTGTATTTGAAGGAAGCTTGGGAAATGATGGGGCCTTCGTTTCTTGATTCGGTGGCGAAGATTTCGAAGGCGAAGGGATTTTGTGAACTTTTGAGGAAGCTTGATGGAGGGTTAGAGCGTTCGGTGAATGAAAAAAGGGACTCTGTTGATAGTGATAGGAATGAATCTTGTAATGATGATGATGATGATCATGTTAATGATGATAATGATAATGTTGATGTTGTTGATGATGATAATGATAATAATGATAATGCTGTTGTTGATGATGATTATGGTGCATGCTGCATGGAGGGTGTGGAATTGACGGGTGAAAAGAAGAGCAAGAAGCAATTGGAAGAGAAAGCTGGTACTTCTGTTGATGCAAATCAGGAAGTGGGTGTGTGTGAAATTCCTGCAAAGAGAGATAAAGCTGTATCCCCAACAGCAATTCAGAAAGGCCATCTTCAGCTCAAACGCAAGCACTCTGCACTTCGACCATGCCATAGGGGAGTTAAAATCTCTGGTCCTGAGGAAATAGAGCCAGCAAAATTGTGGAGCAAATATGAATGCTTGCCTAGTGCTGAAGTTGAAAGAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTACGAGCATTGGTCAAGGATCCTCTCCCTAATGCATTGCATAAGTCTGAAGTGGTAAGATCCAAATTGGCAACAAAAGATATAAATCTTGAGCCACATATTGAAAACCAGAGTGGAGGAATAGATGTACCCGATCCAAATGTGTGCATGAGTATTGTACCTTATCAGCCTAATGATGTGAATCTTGGGAAGAAGACTTCTTCTCATTACAGTAATGTTCGTCACTCCAACTTCATGGAACGGAAAAGTACTGCTCGTACTGATGAGTGGGATGATTCAATGGATAACTTGCCACAAGGAAGACAGCCAAGAAGGAGGAAAAGGAGATGGACTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCTACAATCCGAAATTTTTACAATAACATATTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGGTGA 1608 0.4677 MDKDISRWVLEFLLRSSVPDSLIQKTLTALPLSGADNRLKKTLLLRTLQSQLLKASLSETALQILELLEEIDRNDAVPISDSMRRAYCAVAVECTVKYLAASPDDPSGEYFSAVGRIWRGRVVQMAAAEGGLRSELISGELKRWRDDVEAALWDPKVSERLANLNTRRDALNEVKVYLKEAWEMMGPSFLDSVAKISKAKGFCELLRKLDGGLERSVNEKRDSVDSDRNESCNDDDDDHVNDDNDNVDVVDDDNDNNDNAVVDDDYGACCMEGVELTGEKKSKKQLEEKAGTSVDANQEVGVCEIPAKRDKAVSPTAIQKGHLQLKRKHSALRPCHRGVKISGPEEIEPAKLWSKYECLPSAEVERVRESLKSSSMELRALVKDPLPNALHKSEVVRSKLATKDINLEPHIENQSGGIDVPDPNVCMSIVPYQPNDVNLGKKTSSHYSNVRHSNFMERKSTARTDEWDDSMDNLPQGRQPRRRKRRWTSLEEETLRAGVKMFGEGNWATIRNFYNNIFENRSGVDLKDKWRNMIR* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02244 535 PANTHER MYB TRANSCRIPTION FACTOR 1 535 - -
Rops11g02244 535 MobiDBLite consensus disorder prediction 461 486 - -
Rops11g02244 535 MobiDBLite consensus disorder prediction 216 262 - -
Rops11g02244 535 CDD SANT_TRF 487 535 - -
Rops11g02244 535 Gene3D - 476 535 - -
Rops11g02244 535 Pfam Myb-like DNA-binding domain 484 533 IPR001005 -
Rops11g02244 535 MobiDBLite consensus disorder prediction 229 260 - -
Rops11g02244 535 ProSiteProfiles Myb-like domain profile. 479 534 IPR001005 -
Rops11g02244 535 SMART sant 483 535 IPR001005 -
Rops11g02244 535 SUPERFAMILY Homeodomain-like 480 534 IPR009057 -
Rops11g02244 535 MobiDBLite consensus disorder prediction 461 478 - -
Rops11g02244 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 479 535 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02244 Rops-Chr11 37596272 37602212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02244 487 534 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 3.17e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g02244 Myb_DNA-binding 3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02244 - K11111 aprc:113849788 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02244 11 37596272 37602212 Rops11g02244 11 37596272 37602212 ECH