LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g02222	ATGTCGTATGTGCCTCCACACCTTAGGAACACGAGCTCAACCACCGTGGCTACCACCACCGGAACCCTAGACAACAATCACAACCACCATCACACCAAGCTCGCATTCCCTTCCCCTCATTCTAACTCCAACAACAACACACCTTCTCTCTCCTCGTTCTCCAATGTCTCTCGCCGGAGCTCCGCCGCAGCTCCTCCGTCTTCCAGGATTCTCGCCGTCCCTGAACCCGTGTCCCCTCTCTGGCAACCCTCGGAACGTGTTTCACGCATGAACCCCGAACAGATTGAAGAGGTCCGCTTACGACTTAATCTTGATGTAACTGTTGCATCTGACTCACCTGCTGCACCTGCACCTATAGAATCGTTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAGTTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCAAATTCGGCGCAGTGATGGTCCTCTGGCATTAATTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTTAAAACTGCCATAGTTGTCGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATAGTGGTTGCCACCCCTGGAAGATTTATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGATAATGAGAAACCTTCCAGAGAAGCACCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAGTACTTAGCTAGCCCTGTGCAAGTTAAGGTGGGAAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTACATTTGCTTGTGGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCACTAACAATTGTGTTTGTGGAGAGAAAGACAAGGTGTGATGAAGTTGTTGAAGCATTGGTAGTTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACAGGCCTAGCTACTTCTTTCTACACTGATCGAGACATGTTCCTTGTGGCAAATATAAGGAAGGCAATAGCTGACGCTGAATCCGGGAACACCGTGGCATTTGCAACCGGAAAGGTTGCAAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACTAAAAGAGGCAAATATTGCTTTATCCGGACACTTGGGATTGGGAGCTAGTTCAATTAACATCGAAGATAAGTATAAATTTATGATTACCGCCTCAAACGTTCAAAGAGAGGGCACAGCAGATAGTGCCTGGGATGATTAA	1698	0.4605	MSYVPPHLRNTSSTTVATTTGTLDNNHNHHHTKLAFPSPHSNSNNNTPSLSSFSNVSRRSSAAAPPSSRILAVPEPVSPLWQPSERVSRMNPEQIEEVRLRLNLDVTVASDSPAAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPQIRRSDGPLALILAPTRELAQQIEKEVKAFSRSLESFKTAIVVGGTNIEKQRSELRAGVEIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLASPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLHLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVVEALVVQGLSAVSLHGGRSQSEREAALHDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAALKEANIALSGHLGLGASSINIEDKYKFMITASNVQREGTADSAWDD*	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g02222	565	Gene3D	-	333	524	IPR027417	-
	Rops11g02222	565	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	273	281	IPR000629	-
	Rops11g02222	565	SMART	helicmild6	387	468	IPR001650	-
	Rops11g02222	565	MobiDBLite	consensus disorder prediction	35	64	-	-
	Rops11g02222	565	Pfam	DEAD/DEAH box helicase	144	314	IPR011545	GO:0003676\|GO:0005524
	Rops11g02222	565	CDD	DEADc	131	328	-	-
	Rops11g02222	565	CDD	SF2_C_DEAD	339	477	-	-
	Rops11g02222	565	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	120	148	IPR014014	GO:0003724
	Rops11g02222	565	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	105	519	-	-
	Rops11g02222	565	Gene3D	-	81	331	IPR027417	-
	Rops11g02222	565	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	151	327	IPR014001	-
	Rops11g02222	565	MobiDBLite	consensus disorder prediction	1	70	-	-
	Rops11g02222	565	FunFam	probable ATP-dependent RNA helicase DDX17	80	330	-	-
	Rops11g02222	565	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	351	509	IPR001650	-
	Rops11g02222	565	Pfam	Helicase conserved C-terminal domain	351	468	IPR001650	-
	Rops11g02222	565	MobiDBLite	consensus disorder prediction	1	25	-	-
	Rops11g02222	565	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	488	IPR027417	-
	Rops11g02222	565	SMART	ultradead3	139	342	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g02222	Rops-Chr11	37029667	37036969	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g02222	120	490	Eukaryotic Initiation Factors Gene Family	AT1G72730	36.000	2.53e-70	230

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g02222	K12823		-	gmx:100818387	925.62